BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4634944 =	178 (1.160)	8 (0.050)	5/170	NT	4.5%	coding (367/870 nt)	rob	right oriC‑binding transcriptional activator, AraC family
*	?	NC_000913	4634972 =	172 (1.170)	8 (0.050)	5/170	NT	4.5%	coding (339/870 nt)	rob	right oriC‑binding transcriptional activator, AraC family
Rejected: Frequency below cutoff threshold.

Only 100 of 210 total aligned reads displayed.

GAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCG  >  NC_000913/4634846‑4635043

gAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAAt                                                                                                    <  2:799586/100‑1 (MQ=255)

 cttcgactctcaacagacatttacccgcgcattcaagaagcagtttgcccagactcctgcactttaccgccgttctcctgaatggagcgcctttggtAtt                                                                                                   <  1:1347873‑M1/3‑1 (MQ=255)

  aaTCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTc                                                                                                  <  1:2598833/100‑1 (MQ=255)

  aaTCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTc                                                                                                  <  2:2711397/100‑1 (MQ=255)

   aTCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCa                                                                                                 >  1:3711168/1‑100 (MQ=255)

     cAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCAcc                                                                                               >  1:469073/1‑100 (MQ=255)

     cAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCAcc                                                                                               >  1:956099/1‑100 (MQ=255)

     cAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCAcc                                                                                               <  2:2156733/100‑1 (MQ=255)

      agagATTTGCTCCAGCGAACAGGAGTAGCTCTGGTTAACACCAATCAGCTGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATATTGACTTCAcc                                                                                               >  2:3846531/1‑99 (MQ=255)

      agagATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCAccc                                                                                              <  2:2639845/100‑1 (MQ=255)

      agagATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGAAAAATTTGTGCTCTGGCATAGTGAATTCAccc                                                                                              >  1:3268608/1‑100 (MQ=255)

          aTTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGc                                                                                          <  2:359776/100‑1 (MQ=255)

           tttGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCg                                                                                         >  2:4051590/1‑100 (MQ=255)

              gCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAg                                                                                      >  1:1725100/1‑100 (MQ=255)

                tCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAgcg                                                                                    >  1:1556648/1‑100 (MQ=255)

                tCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAgcg                                                                                    >  1:2572375/1‑100 (MQ=255)

                tCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAgcg                                                                                    >  2:1351973/1‑100 (MQ=255)

                 ccAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAgcgg                                                                                   >  1:1384098/1‑100 (MQ=255)

                 ccAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAgcgg                                                                                   >  1:1978250/1‑100 (MQ=255)

                  cAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAgcggc                                                                                  <  2:3676297/100‑1 (MQ=255)

                   aGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAgcggcg                                                                                 >  1:2263407/1‑100 (MQ=255)

                          aGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGTGGGAAt                                                                          <  1:1497424/100‑1 (MQ=255)

                           ggAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATa                                                                         >  2:4208359/1‑100 (MQ=255)

                           gcgcattcaagaagcagtttgcccagactcctgcactttaccgccgttctcctgaatggagcgcctttggtATTCACCCAGGCGTAGCGGCGGGCGAATa                                                                         >  2:1636795‑M1/72‑100 (MQ=255)

                            gAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATAc                                                                        <  1:346319/100‑1 (MQ=255)

                            cgcattcaagaagcagtttgcccagactcctgcactttaccgccgttctcctgaatggagcgcctttggtATTCACCCAGGCGTAGCGGCGGGCGAATAc                                                                        >  1:1694621‑M1/71‑100 (MQ=255)

                             aGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATAcc                                                                       <  2:123852/100‑1 (MQ=255)

                                aGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCaaa                                                                    <  1:3686997/100‑1 (MQ=255)

                                 tcaagaagcagtttgcccagactcctgcactttaccgccgttctcctgaatggagcgcctttggtATTCACCCAGGCGTAGCGGCGGGCGAATACCaaa                                                                    >  1:784939‑M1/66‑99 (MQ=255)

                                 tcaagaagcagtttgcccagactcctgcactttaccgccgttctcctgaatggagcgcctttggtATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAg                                                                   >  2:2198695‑M1/66‑100 (MQ=255)

                                 gCTCTGGGTAACACCAATCAGCGGCGTATCTTCGAGGGTGACAAATTTGTGATCTGGCATAGTAAATTCACACAGGCGTAGCGGAGGGCGAATa                                                                         >  1:232499/1‑94 (MQ=255)

                                 gCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAg                                                                   <  2:3776643/100‑1 (MQ=255)

                                 gCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAg                                                                   <  2:2561152/100‑1 (MQ=255)

                                 gCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAg                                                                   >  2:3270911/1‑100 (MQ=255)

                                 gCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAg                                                                   <  2:2376399/100‑1 (MQ=255)

                                 gCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAg                                                                   >  2:4038359/1‑100 (MQ=255)

                                 gCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAg                                                                   <  2:693591/100‑1 (MQ=255)

                                  ctctGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAgg                                                                  >  2:1586997/1‑100 (MQ=255)

                                  ctctGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAgg                                                                  <  2:2903771/100‑1 (MQ=255)

                                  ctctGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGACATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAgg                                                                  <  1:1025676/100‑1 (MQ=255)

                                   tctGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGgc                                                                 <  1:224924/100‑1 (MQ=255)

                                    ctGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGgcg                                                                >  1:3145034/1‑100 (MQ=255)

                                     tGGGTAACACCAAACAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGgc                                                                 <  1:727/98‑1 (MQ=255)

                                       ggTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTc                                                             >  2:2589030/1‑100 (MQ=255)

                                       ggTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTc                                                             <  2:418241/100‑1 (MQ=255)

                                       ggTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTc                                                             >  2:528763/1‑100 (MQ=255)

                                        gTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTcc                                                            <  1:3634784/100‑1 (MQ=255)

                                          aaCACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCAt                                                          >  1:120083/1‑100 (MQ=255)

                                          aaCACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCAt                                                          >  2:746575/1‑100 (MQ=255)

                                            cacCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTc                                                        >  2:3872637/1‑100 (MQ=255)

                                            cacCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTc                                                        >  2:2437609/1‑100 (MQ=255)

                                            cacCAATCAGCGGCGTATATTCCAGGGTGAGAAATTTGTGCTCTGGCATAGTGAATTCACCCAGTCGTAGCGGCGGGAGAATACTAAAGACGCt                                                              >  1:1882624/1‑94 (MQ=255)

                                             acCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGGGAATACCAAAGGCGCTCCAtt                                                         >  1:1586519/1‑98 (MQ=255)

                                             acCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCa                                                       >  2:2247253/1‑100 (MQ=255)

                                             acCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCa                                                       <  1:1713670/100‑1 (MQ=255)

                                             acCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCa                                                       <  1:4170963/100‑1 (MQ=255)

                                             acCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCa                                                       <  1:96666/100‑1 (MQ=255)

                                              ccAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAg                                                      >  2:2792851/1‑100 (MQ=255)

                                              ccAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAg                                                      >  2:2009535/1‑100 (MQ=255)

                                              ccAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAg                                                      >  1:1930188/1‑100 (MQ=255)

                                              ccAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAg                                                      >  2:2443257/1‑100 (MQ=255)

                                              ccAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAg                                                      <  1:528761/100‑1 (MQ=255)

                                               cAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAgg                                                     <  2:286865/100‑1 (MQ=255)

                                               cAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAgg                                                     <  2:3518010/100‑1 (MQ=255)

                                               cAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAgg                                                     <  1:2630624/100‑1 (MQ=255)

                                               cAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAgg                                                     >  1:2982051/1‑100 (MQ=255)

                                               cAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAgg                                                     <  1:689929/100‑1 (MQ=255)

                                               cAATCAGCGGCGTATCTTCCAGGCTGGCAAATTTGTGCTCTGGCATAGTGAATTCACCCATGCGTAGCGGCGGGCGAATACCAAAGGCTCTCCATTCAgg                                                     <  1:2646916/100‑1 (MQ=255)

                                                 aTCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGgag                                                   <  2:3490911/100‑1 (MQ=255)

                                                     gcggcgTATCTTCCAGGGTGACGAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCACTCAGGAGAAcg                                               >  1:2479391/1‑100 (MQ=255)

                                                       ggcgTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAAcggc                                             >  2:1156799/1‑100 (MQ=255)

                                                         cgTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAAcggcgg                                           <  1:3909003/100‑1 (MQ=255)

                                                              cTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAg                                      >  2:476811/1‑100 (MQ=255)

                                                                tCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTg                                    >  2:866262/1‑100 (MQ=255)

                                                                 cgggggTGGCAAGTGTGTGCTCTGGCATAGTGAATTCACCCTGGCGTAGGGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGc                                   <  1:4106238/97‑1 (MQ=255)

                                                                 ccAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGc                                   <  1:2009531/100‑1 (MQ=255)

                                                                  cAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCa                                  <  1:74947/100‑1 (MQ=255)

                                                                   aGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAg                                 <  2:3638760/100‑1 (MQ=255)

                                                                    gggTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAgg                                <  1:2355067/100‑1 (MQ=255)

                                                                    gggTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAgg                                >  2:1489977/1‑100 (MQ=255)

                                                                    gggTGAAAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAgg                                <  1:353991/100‑1 (MQ=255)

                                                                        gACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTc                            >  1:998124/1‑100 (MQ=255)

                                                                         aCAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCt                           <  2:334095/100‑1 (MQ=255)

                                                                          cAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTg                          <  1:640080/100‑1 (MQ=255)

                                                                              tttGTGCTCTGGCATAGTGAATGCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTggg                        <  1:4005921/98‑1 (MQ=255)

                                                                                    ctctGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACtac                <  2:1700831/100‑3 (MQ=255)

                                                                                    ctctGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGc                >  2:3410943/1‑100 (MQ=255)

                                                                                       tGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGcttc             <  1:817284/100‑1 (MQ=255)

                                                                                       tGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGcttc             <  1:3314176/100‑1 (MQ=255)

                                                                                         gCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGcttctt           <  2:3383347/100‑1 (MQ=255)

                                                                                         gCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGcttctt           <  2:3559530/100‑1 (MQ=255)

                                                                                          cATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTg          <  2:319318/100‑1 (MQ=255)

                                                                                          cATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTg          <  1:1938015/100‑1 (MQ=255)

                                                                                          cATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTg          <  2:1366314/100‑1 (MQ=255)

                                                                                            tattcaaTTCACCCAGACGTCTCGGCGTGCGAATACCAAAGCCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGaa        <  1:4208892/95‑1 (MQ=255)

                                                                                             aGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAAt       >  2:186854/1‑100 (MQ=255)

                                                                                              gTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGCACGGCGGTACAGTGCAGGAGTCTGCGCAAACTGCTTCTTGAAt       >  1:2020686/1‑99 (MQ=255)

                                                                                               tGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATgc     >  2:3051184/1‑100 (MQ=255)

                                                                                                gAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATgcg    >  2:2049332/1‑100 (MQ=255)

                                                                                                gAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATgcg    >  2:1821017/1‑100 (MQ=255)

GAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCG  >  NC_000913/4634846‑4635043

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.