New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4634944 =178 (1.160)8 (0.050) 5/170 NT 4.5% coding (367/870 nt) rob right oriC‑binding transcriptional activator, AraC family
?NC_000913 4634972 = 172 (1.170)coding (339/870 nt) rob right oriC‑binding transcriptional activator, AraC family
Rejected: Frequency below cutoff threshold.

Only 100 of 217 total aligned reads displayed.

GGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCTGTTGAGAGTCGAAGCGG  >  NC_000913/4634873‑4635071
                                                                                                   |                                                                                                   
ggAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATa                                                                                                     >  2:817286/1‑100 (MQ=255)
ggAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATa                                                                                                     >  2:4208359/1‑100 (MQ=255)
 cgcattcaagaagcagtttgcccagactcctgcactttaccgccgttctcctgaatggagcgcctttggtATTCACCCAGGCGTAGCGGCGGGCGAATAc                                                                                                    >  1:1694621‑M1/71‑100 (MQ=255)
      gCTCTGGGTAACAGCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAg                                                                                               >  1:2633799/1‑100 (MQ=255)
      gCTCTGGGTAACACCAATCAGCGGCGTATCTTCGAGGGTGACAAATTTGTGATCTGGCATAGTAAATTCACACAGGCGTAGCGGAGGGCGAATa                                                                                                     >  1:232499/1‑94 (MQ=255)
      gCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAg                                                                                               <  2:2561152/100‑1 (MQ=255)
       ctctGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAgg                                                                                              >  2:1586997/1‑100 (MQ=255)
       ctctGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAgg                                                                                              <  2:2903771/100‑1 (MQ=255)
       ctctGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGACATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAgg                                                                                              <  1:1025676/100‑1 (MQ=255)
        tctGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGgc                                                                                             <  1:224924/100‑1 (MQ=255)
        tctGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGgc                                                                                             <  2:1876539/100‑1 (MQ=255)
          tGGGTAACACCAAACAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGgc                                                                                             <  1:727/98‑1 (MQ=255)
            ggTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTc                                                                                         >  2:528763/1‑100 (MQ=255)
            ggTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTc                                                                                         >  2:2589030/1‑100 (MQ=255)
            ggTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTc                                                                                         <  2:2633808/100‑1 (MQ=255)
            ggTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTc                                                                                         >  2:694034/1‑100 (MQ=255)
             gTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTcc                                                                                        <  1:3634784/100‑1 (MQ=255)
             gTAACACCAATCAGCGGCGTAAATTACAGTGGTACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGGAGCGGCGGGCGAATACCAAAGGCGCTcc                                                                                        <  1:977935/100‑1 (MQ=255)
               aaCACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCAt                                                                                      >  1:120083/1‑100 (MQ=255)
               aaCACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCAt                                                                                      >  2:746575/1‑100 (MQ=255)
                 cacCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTc                                                                                    <  2:1734887/100‑1 (MQ=255)
                 cacCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTc                                                                                    >  2:3872637/1‑100 (MQ=255)
                 cacCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTc                                                                                    >  2:4182425/1‑100 (MQ=255)
                 cacCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTc                                                                                    >  1:1760912/1‑100 (MQ=255)
                 cacCAATCAGCGGCGTATATTCCAGGGTGAGAAATTTGTGCTCTGGCATAGTGAATTCACCCAGTCGTAGCGGCGGGAGAATACTAAAGACGCt                                                                                          >  1:1882624/1‑94 (MQ=255)
                  acCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCa                                                                                   <  1:4170963/100‑1 (MQ=255)
                   ccAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAg                                                                                  >  1:1930188/1‑100 (MQ=255)
                   ccAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAg                                                                                  <  1:528761/100‑1 (MQ=255)
                   ccAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAg                                                                                  >  2:2009535/1‑100 (MQ=255)
                   ccAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAg                                                                                  >  2:2443257/1‑100 (MQ=255)
                    ccaTCAGCGGCGTATCTTCCAGGGTGACAAATTTTTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAgg                                                                                 <  1:2582885/98‑1 (MQ=255)
                    cAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAgg                                                                                 <  2:286865/100‑1 (MQ=255)
                    cAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAgg                                                                                 <  2:3518010/100‑1 (MQ=255)
                     aaTCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGga                                                                                <  2:1031802/100‑1 (MQ=255)
                      aTCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGgag                                                                               <  2:3490911/100‑1 (MQ=255)
                        cAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGaa                                                                             >  2:2341579/1‑100 (MQ=255)
                         aGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCTAAGGCGCTCCATTCAGgaagat                                                                            >  2:630098/1‑96 (MQ=255)
                         aGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAAc                                                                            >  1:3284269/1‑100 (MQ=255)
                          gcggcgTATCTTCCAGGGTGACGAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCACTCAGGAGAAcg                                                                           >  1:2479391/1‑100 (MQ=255)
                              cttATCTTCCAGGGGGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAAcggcgt                                                                       <  1:965090/98‑2 (MQ=255)
                              cgTATCTTCCAGGGTGACGAATTTGTGCTCGGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAAcggcgg                                                                       <  1:4081165/100‑1 (MQ=255)
                                   cTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAg                                                                  <  2:1359283/100‑1 (MQ=255)
                                    ttCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGt                                                                 >  2:478171/1‑100 (MQ=255)
                                     tCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTg                                                                >  2:866262/1‑100 (MQ=255)
                                      ccAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGc                                                               <  1:2009567/100‑1 (MQ=255)
                                       cAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCa                                                              <  1:74947/100‑1 (MQ=255)
                                        aGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAg                                                             <  2:3638760/100‑1 (MQ=255)
                                        aGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAg                                                             >  2:2781880/1‑100 (MQ=255)
                                         gggTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAgg                                                            <  1:2355067/100‑1 (MQ=255)
                                         gggTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAgg                                                            <  2:3813787/100‑1 (MQ=255)
                                         gggTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAgg                                                            <  1:4113970/100‑1 (MQ=255)
                                         gggTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAgg                                                            >  2:1489977/1‑100 (MQ=255)
                                              aCAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCt                                                       >  2:3738604/1‑100 (MQ=255)
                                               cAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTg                                                      >  1:2056179/1‑100 (MQ=255)
                                               cAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTg                                                      >  1:3497198/1‑100 (MQ=255)
                                               cAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTg                                                      <  1:640080/100‑1 (MQ=255)
                                                 aaTTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTggg                                                    >  2:3957709/1‑100 (MQ=255)
                                                 aaTTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTggg                                                    <  2:3285881/100‑1 (MQ=255)
                                                         ctctGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGc                                            >  2:3410943/1‑100 (MQ=255)
                                                         ctctGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGc                                            >  2:2426027/1‑100 (MQ=255)
                                                         ctctGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGc                                            <  2:2176374/100‑1 (MQ=255)
                                                          tctGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGct                                           >  2:3380938/1‑100 (MQ=255)
                                                           ctGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTTAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGctt                                          >  1:2866556/1‑100 (MQ=255)
                                                            tGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGcttc                                         <  1:3314176/100‑1 (MQ=255)
                                                             ggCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGcttct                                        >  2:1217373/1‑100 (MQ=255)
                                                              gCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGcttctt                                       <  2:3559530/100‑1 (MQ=255)
                                                               cctttggtattcgcccgccggtacgcctgggtgaatACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTg                                      >  1:2605084‑M2/37‑100 (MQ=255)
                                                               cATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTg                                      <  1:1938015/100‑1 (MQ=255)
                                                                ctttggtattcgcccgccgctacgcctgggtgaatACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGa                                     >  2:2198695‑M2/36‑100 (MQ=255)
                                                                ctttggtattcgcccgccgctacgcctgggtgaatACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGa                                     >  2:2211379‑M2/36‑100 (MQ=255)
                                                                aTAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGa                                     <  2:322032/100‑1 (MQ=255)
                                                                 tttggtattcgcccgccgctacgcctgggtgaatACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGa                                     >  1:784939‑M2/35‑99 (MQ=255)
                                                                 tAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGaa                                    <  1:1443461/100‑1 (MQ=255)
                                                                    tGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATgc                                 >  2:4159666/1‑100 (MQ=255)
                                                                     ggATTCACGCAGGCGTAGCGGCGGGCGAATACGGAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGAGCAGGAGTGTGGGCAAACTGCTTCTTGAATg                                  <  1:169498‑M1/96‑1 (MQ=255)
                                                                     gAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATgcg                                >  2:2049332/1‑100 (MQ=255)
                                                                      tattcgcccgccgctacgcctgggtgaatACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATgcgc                               >  1:1578897‑M2/30‑100 (MQ=255)
                                                                      tattcgcccgccgctacgcctgggtgaatACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATgcgc                               >  2:1636795‑M2/30‑100 (MQ=255)
                                                                         TCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCggg                            >  1:345856‑M1/1‑100 (MQ=255)
                                                                         TCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCggg                            >  1:2133941‑M1/1‑100 (MQ=255)
                                                                           aCCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTa                          >  2:469615/1‑100 (MQ=255)
                                                                           aCCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTa                          <  1:480651/100‑1 (MQ=255)
                                                                           aCCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTa                          <  1:4234701/100‑1 (MQ=255)
                                                                            cccAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTaa                         >  1:3089926/1‑100 (MQ=255)
                                                                             ccAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTaaa                        >  1:2425677/1‑100 (MQ=255)
                                                                                 gCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGCCAAACTGCTTCTTGAATGCGCGGGTAAATGTc                    <  2:4053036/100‑1 (MQ=255)
                                                                                  cGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCt                   <  2:3140058/100‑1 (MQ=255)
                                                                                   gTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCTg                  >  1:386063/1‑100 (MQ=255)
                                                                                    tAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCTGt                 <  2:325563/100‑1 (MQ=255)
                                                                                      gcggcgGGCGAATACCAAAGGCGCTCCATTCAGGAGCACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCTGTTg               >  1:665552/1‑100 (MQ=255)
                                                                                       cggcggGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCTgagat              >  2:1266808/1‑96 (MQ=255)
                                                                                       cggcggGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCTGTTga              >  2:3440408/1‑100 (MQ=255)
                                                                                         gcgggcgAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCTGTTgaga            <  2:1696221/100‑1 (MQ=255)
                                                                                          cgggcgAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCTGTTGagag           <  2:3590219/100‑1 (MQ=255)
                                                                                          cgggcgAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCTGTTGagag           >  1:3936989/1‑100 (MQ=255)
                                                                                          cgggcgAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCTGTTGagag           >  1:456767/1‑100 (MQ=255)
                                                                                          cgggcgAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCCTGAATGCGCGGGTAAATGTCTGTTGagag           <  1:1081676/100‑1 (MQ=255)
                                                                                                aatACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCTGTTGAGAGTCGAAg     <  1:1347873‑M2/97‑1 (MQ=255)
                                                                                                  tACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGCGTCTAGTCAAACTGCTTCTTGAATGCGCGGGTAAATCTCTATTGAGAGTCGAACCg   >  1:3710179‑M2/2‑100 (MQ=255)
                                                                                                  tACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCTGTTGAGAGTCGAAGCg   <  2:1831296‑M2/99‑1 (MQ=255)
                                                                                                   |                                                                                                   
GGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCTGTTGAGAGTCGAAGCGG  >  NC_000913/4634873‑4635071

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.