BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3555795 =	NA (NA)	10 (0.070)	7/162	NT	NA	intergenic (+5/+38)	malT/rtcA	mal regulon transcriptional activator/RNA 3'‑terminal phosphate cyclase
*	?	NC_000913	3555821 =	NA (NA)	10 (0.070)	7/162	NT	NA	intergenic (+31/+12)	malT/rtcA	mal regulon transcriptional activator/RNA 3'‑terminal phosphate cyclase

Only 100 of 186 total aligned reads displayed.

GTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTC  >  NC_000913/3555722‑3555920

gTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCtt                                                                                                     >  2:277982/1‑100 (MQ=255)

gTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCtt                                                                                                     <  2:2678869/100‑1 (MQ=255)

cttgccggtgcggtttagtttgatagaaacagatggcgtaacgcgggtgagcattgaatgatgcagagatgtaAGCCGGATAACGCGCCAGATCCGGCtt                                                                                                     >  2:1616502‑M1/74‑100 (MQ=255)

  tgccggtgcggtttagtttgatagaaacagatggcgtaacgcgggtgagcattgaatgatgcagagatgtaAGCCGGATAACGCGCCAGATCCGGCTTAc                                                                                                   >  1:1440787‑M1/72‑100 (MQ=255)

  ggCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATCACACGCCAGATCCGGCTTAc                                                                                                   >  1:3377676/1‑100 (MQ=255)

  ggCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGCTCCGGCTTAc                                                                                                   >  1:4235844/1‑100 (MQ=255)

  ggCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTAc                                                                                                   <  2:943847/100‑1 (MQ=255)

  ggCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTAc                                                                                                   <  2:2504795/100‑1 (MQ=255)

  ggCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTAc                                                                                                   >  2:2318127/1‑100 (MQ=255)

  ggCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTAc                                                                                                   <  1:2213851/100‑1 (MQ=255)

  ggCCCATCGCCAGGATGCGGTACAACACGCCCAGCAAGTGCTGAACATGATGGGGTACGGCGTGTAAGATTCGCCGGATAACGCGCCAAATCCGGCTTAc                                                                                                   >  1:2196527/1‑100 (MQ=255)

   gccggtgcggtttagtttgatagaaacagatggcgtaacgcgggtgagcattgaatgatgcagagatgtaAGCCGGATAACGCGCCAGATCCGGCTTACa                                                                                                  >  1:3603257‑M1/71‑100 (MQ=255)

     cggggcggtttagtttgatagaaacagatggcgtaacgcgggtgagcagtgaatgatgcagggatgtaAGCCGGATAACGCGCCAGTTCCGGCTTACAtc                                                                                                >  1:3592891‑M1/69‑100 (MQ=255)

     ccATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTACGCTTAGCCGGATAACGCGCCAGATCCGGCTTACAtc                                                                                                >  1:1078306/1‑100 (MQ=255)

          gCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTg                                                                                            <  1:367413/99‑1 (MQ=255)

          gCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGc                                                                                           >  2:1528604/1‑100 (MQ=255)

              ggATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGcatca                                                                                       <  1:3366190/100‑1 (MQ=255)

               gATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGcatcat                                                                                      <  1:1852354/100‑1 (MQ=255)

                aTGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCAtt                                                                                     <  1:1528600/100‑1 (MQ=255)

                 tGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTc                                                                                    <  1:1694030/100‑1 (MQ=255)

                 tGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTc                                                                                    <  2:2432269/100‑1 (MQ=255)

                 tGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTc                                                                                    <  1:2508781/100‑1 (MQ=255)

                   cGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTc                                                                                    >  1:49570/1‑98 (MQ=255)

                   cGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCaa                                                                                  <  2:1354844/100‑1 (MQ=255)

                   cGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGAGAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCaa                                                                                  >  1:971245/1‑100 (MQ=255)

                     gTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATg                                                                                <  2:227708/100‑1 (MQ=255)

                     gTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATg                                                                                <  2:1014678/100‑1 (MQ=255)

                       acaacaCGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCt                                                                              >  2:125961/1‑100 (MQ=255)

                         aacaCGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCa                                                                            >  1:640270/1‑100 (MQ=255)

                           cacGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCAcc                                                                          <  1:1814382/100‑1 (MQ=255)

                             cGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGATTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCcg                                                                        >  1:2322811/1‑100 (MQ=255)

                              gCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCcgc                                                                       <  1:1325028/100‑1 (MQ=255)

                                 cAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGtt                                                                    >  2:552357/1‑100 (MQ=255)

                                   gCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTAc                                                                  >  1:2018238/1‑100 (MQ=255)

                                    cAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACg                                                                 <  1:3099316/100‑1 (MQ=255)

                                      aTTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGcc                                                               <  2:4268846/100‑1 (MQ=255)

                                      aTTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGcc                                                               <  1:3247065/100‑1 (MQ=255)

                                      aTTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGcc                                                               <  1:1669739/100‑1 (MQ=255)

                                       ttGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCa                                                              <  1:1024996/100‑1 (MQ=255)

                                       ttGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCa                                                              <  2:3796609/100‑1 (MQ=255)

                                       ttGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCa                                                              <  2:704458/100‑1 (MQ=255)

                                             aaGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGtt                                                        <  2:1885600/100‑1 (MQ=255)

                                               gatgatGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGtttn                                                      <  1:3720865/100‑2 (MQ=255)

                                               gatgatGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTc                                                      <  1:3327633/100‑1 (MQ=255)

                                                atgatgGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCt                                                     >  2:2415051/1‑100 (MQ=255)

                                                atgatgGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCt                                                     <  2:1221036/100‑1 (MQ=255)

                                                aggagggggTACGGCGTCTAAGTTTAGCCAGATAACGCTCCATATCCGGCTTACATCTCTCCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTc                                                      <  1:4149117/94‑1 (MQ=255)

                                                 tgatgGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCATATCCCGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTa                                                    <  1:4021797/100‑1 (MQ=255)

                                                   atgGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATc                                                  >  2:3057934/1‑100 (MQ=255)

                                                    tgGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCa                                                 <  1:3057922/100‑1 (MQ=255)

                                                     ggggTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATAATTCAATGCTAACCCGCGTTAAGCCATCTGTTTCTATCaa                                                >  2:871120/1‑100 (MQ=255)

                                                      gggTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCGATGCTCACCCGCGTTACGCCATCTGTTTCTATCaaa                                               >  2:3005870/1‑100 (MQ=255)

                                                      gggTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCaaa                                               >  1:3484941/1‑100 (MQ=255)

                                                       ggTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAAc                                              <  2:3065299/100‑1 (MQ=255)

                                                       ggTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAAc                                              <  2:3966370/100‑1 (MQ=255)

                                                       ggTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAAc                                              >  1:952165/1‑100 (MQ=255)

                                                       ggTACGGCGCATAAGTTTCGCCCGATAACGCGACATATCCGGCTTACATCTATGCATCATTCACTGCTCACCCGAGTTACGCCATCTGTTTCTATCa                                                 <  1:3395310/97‑1 (MQ=255)

                                                        gTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACt                                             >  1:3101496/1‑100 (MQ=255)

                                                         tACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTa                                            <  1:1498216/100‑1 (MQ=255)

                                                           cGGTGTGTAAGTTTAGCCGGATAACGCGCCAGAGCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGTGTTACGCCATCTGTTTCTATCAAACTaaa                                          >  1:2568759/1‑100 (MQ=255)

                                                            atgcagagatgtaagccggatctggcgcgttatccggctTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAAc                                         >  2:1104769‑M2/40‑100 (MQ=255)

                                                             gCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAAcc                                        <  1:1088272/100‑1 (MQ=255)

                                                                tgtAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCa                                     <  1:1183021/100‑1 (MQ=255)

                                                                tgtAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACAGCa                                     >  1:1278191/1‑100 (MQ=255)

                                                                 gtcagcttAGCCGGCTAACGCGCCAGATCCGAATTACATCTCGGCATCCTCCACTCCTCCCCCGCCTCACGCCAGCTGTTTCTATCAAACAACAcc                                        >  1:3645358/7‑96 (MQ=255)

                                                                  tAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCATCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCAcc                                   >  2:3224077/1‑100 (MQ=255)

                                                                   gatgtaagccggatctggcgcgttatccggctTACATCTCTGCATCATTCAATGCCCACCCGCGCTACGCCATCTGTTTCTATCAAACTAAACCCCACCg                                  >  1:1371093‑M2/33‑100 (MQ=255)

                                                                    aGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCgg                                 <  1:3011458/100‑1 (MQ=255)

                                                                     tgtaagccggatctggcgcgttatccggcaTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGc                                >  2:1976157‑M2/31‑100 (MQ=255)

                                                                     tgtaAGCCGGATCTGGCGCGTTATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGc                                <  1:32363‑M1/96‑1 (MQ=255)

                                                                      tttAGCCGGATAACGCGCCAGATCCGGCTTATATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCa                               <  2:2568766/100‑1 (MQ=255)

                                                                      tttAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCa                               <  1:2415045/100‑1 (MQ=255)

                                                                      tttAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTCACGCCATCTGTTTCGATCAAACTAAACCGCACCGGc                                >  1:2883909/1‑99 (MQ=255)

                                                                      gtaagccggatctggcgcgttatccggctTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCa                               >  2:87151‑M2/30‑100 (MQ=255)

                                                                        tAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAACCCGCACCGGCAAg                             >  2:2165434/1‑100 (MQ=255)

                                                                         agccggatctggcgcgttatccggctGGTATCTTTGCATCCTTCAATGCTCACCCGCGTTACGCCATCTGTTTCTCTCAAACTAAACCGCACCGGCTAGa                            >  1:273657‑M2/27‑100 (MQ=255)

                                                                         AGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGa                            <  2:1472460‑M1/100‑1 (MQ=255)

                                                                          gccggatctggcgcgttatccggctTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGaa                           >  1:1388084‑M2/26‑100 (MQ=255)

                                                                          GCCGGTTAGCGCGCCAGATCCGGCTTACATCTCTGGATCTTTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGaa                           >  1:1230796‑M1/1‑100 (MQ=255)

                                                                          GCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGaa                           <  1:164087‑M1/100‑1 (MQ=255)

                                                                          GCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGaa                           <  2:1357664‑M1/100‑1 (MQ=255)

                                                                          GCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGaa                           <  2:2097799‑M1/100‑1 (MQ=255)

                                                                          GCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGaa                           <  2:1997191‑M1/100‑1 (MQ=255)

                                                                           CCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGaaa                          <  1:3975220‑M1/100‑1 (MQ=255)

                                                                           CCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGaaa                          >  1:661601‑M1/1‑100 (MQ=255)

                                                                              GATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGc                       >  1:211035‑M1/1‑100 (MQ=255)

                                                                              GATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGc                       >  1:2716555‑M1/1‑100 (MQ=255)

                                                                                TAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTc                     <  2:419434‑M1/100‑1 (MQ=255)

                                                                                 aaCGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTcc                    <  2:1839745/100‑1 (MQ=255)

                                                                                  aCGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTcca                   >  1:2141731/1‑100 (MQ=255)

                                                                                   cgcgCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTcca                   >  2:4106100/1‑99 (MQ=255)

                                                                                    gcgcCAGATCCGGCTTACATCTCTGCATCATTCCATGCTCACCCGCGTTACGCCAGCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTccacc                 <  1:1908310/100‑1 (MQ=255)

                                                                                    gcgcCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTACAAAACTAAACCGCACCGGCAAGAAACCCCccacc                 >  1:166017/1‑100 (MQ=255)

                                                                                       ccAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCaccacc              <  2:3113421/100‑1 (MQ=255)

                                                                                        cAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACcg             <  2:763207/100‑1 (MQ=255)

                                                                                          gATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACcgcg           >  2:296019/1‑100 (MQ=255)

                                                                                               ggctTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCgatatn      <  1:2089716‑M2/96‑2 (MQ=255)

                                                                                                 ctTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACcgc            >  1:3142710‑M2/3‑92 (MQ=255)

                                                                                                 ctTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGcgatct       >  1:1526061‑M2/3‑95 (MQ=255)

                                                                                                 ctTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTgg    >  2:1095511‑M2/3‑100 (MQ=255)

GTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTC  >  NC_000913/3555722‑3555920

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.