New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2393130	NA (NA)	10 (0.070)	4/164	NT	NA	intergenic (‑89/+75)	nuoM/nuoL	NADH:ubiquinone oxidoreductase, membrane subunit M/NADH:ubiquinone oxidoreductase, membrane subunit L
	?	NC_000913	= 2393162	NA (NA)					noncoding (32/36 nt)	REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences

TAGTAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTgtcggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2393033‑2393130 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCGGATAAGCCGCCTTCGCGGTGCATCCGACACTACCCCCAGTCCGAAGAGAATTTTCTGTCGTGAGAATTCGTTGAAAATCCGGTCCTGACGGGACTTTTACAA  <  NC_000913/2393162‑2393057                                                                                                                                                                                                              TAGTAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGT                                                                                                          <  2:1070023/100‑1   GTAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCG                                                                                                        >  2:2030619/1‑100     AACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGca                                                                                                      >  2:2505929/1‑98     AACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGA                                                                                                      <  2:3596253/100‑1     AACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGA                                                                                                      >  2:3129184/1‑100         TGGCGATCTTTATTCCGTTTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGAT                                                                                                     <  2:936884/97‑1                               AAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATAAGCCGCCTTCGCGGTGCATCCGAC                                                                            <  1:870614/100‑1                               AAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATAAGCCGCCTTCGCGGTGCATCCGAC                                                                            <  1:1473281/100‑1                               AAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATAAGCCGCCTTCGCGGTGCATCCGAC                                                                            <  2:245002/100‑1                               AAGTCCCGTCAGGACCGGACTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATAAGCCGCCTTCGCGGTGCATCCGAC                                                                            <  1:915481/100‑1                               AAGTCCCGTCAGCACCGGATTTTCAACGAAGTCTCACGACACAAACTTCTCTTCGGATTGGGGGTAGTGTCGGATAAGCCGCCTTCGCGGTGCATCCGAC                                                                            <  2:815735/100‑1                                 GTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATAAGCCGCCTTCGCGGTGCATCCGACAC                                                                          <  2:3374300/100‑1                                 GTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATAAGCCGCCTTCGCGGTGCATCCGACAC                                                                          <  2:3202742/100‑1                                 GTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATAAGCCGCCTTCGCGGTGCATCCGACAC                                                                          <  1:2613555/100‑1                                      GTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATAAGCCGCCTTCGCGGTGCATCCGACACTACCC                                                                     <  1:649812/100‑1                                                                           AATTCTCTTCGGACTGGGGGTAGTGTCGGATAAGCCGCCTTCGCGGTGCATCCGACACTACCCCCAGTCCGAAGAGAATTTTCTGTCGTGAGAATTCGTT                                <  1:1427655/100‑1                                                                                                   GTCGGATAAGCCGCCTTCGCGGTGCATCCGACACTACCCCCAGTCCGAAGAGAATTTTCTGTCGTGAGAATTCGTTGAAAATCCGGTCCTGACGGGACTT        >  2:235574/1‑100                                                                                                    TCGGATAAGCCGCCTTCGCGGTGCATCCGACACTACCCCCAGTCCGAAGAGAATTTTCTGTCGTGAGAATTCGTTGAAAATCCGGTCCTGACGGGACTTT       >  1:247670/1‑100                                                                                                    TCGGATAAGCCGCCTTCGCGGTGCATCCGACACTACCCCCAGTCCGAAGAGAATTTTCTGTCGTGAGAATTCGTTGAAAATCCGGTCCTGACGGGACTTT       <  1:1239544/100‑1                                                                                                     CGGATAAGCCGCCTTCGCGGTGCATCCGACACTACCCCCAGTCCGAAGAGAATTTTCTGTCGTTAGAATTCGTTGAAAAACCGGTCCTGACGGGACTTT       <  2:137636/99‑1                                                                                                     CGGATAAGCCGCCTTCGCGGTGCATCCGACACTACCCCCAGTCCGAAGAGAATTTTCTGTCGTGAGAATTCGTTGAAAATCCGGTCCTGACGGGACTTTT      <  1:1105089/100‑1                                                                                                      GGATAAGCCGCCTTCGCGGTGCATCCGACACTACCCCCAGTCCGAAGAGAATTTTCTGTCGTGAGAATTCGTTGAAAATCCGGTCCTGACGGGACTTTTA     >  2:3324399/1‑100                                                                                                      GGATAAGCCGCCTTCGCGGTGCATCCGACACTACCCCCAGTCCGAAGAGAATTTTCTGTCGTGAGAATTCGTTGAAAATCCGGTCCTGACGGGACTTTTA     <  2:3456054/100‑1                                                                                                      GGATAAGCCGCCTTCGCGGTGCATCCGACACTACCCCCAGTCCGAAGAGAATTTTCTGTAGAGAGAATTCGTTGAAAATCCGGTCCTGAAGGGACTGTTA     >  2:3763344/1‑100                                                                                                       GATAAGCCGCCTTCGCGGTGCATCCGACACTACCCCCAGTCCGAAGAGAATTTTCTGTCGTGAGAATTCGTTGAAAATCCGGTCCTGACGGGACTTTTAC    >  2:1004148/1‑100                                                                                                         TAAGCCGCCTTCGCGGTGCATCCGACACTACCCCCAGTCCGAAGAGAATTTTCTGTCGTGAGAATTCGTTGAAAATCCGGTCCTGACGGGACTTTTACAA  >  1:141889/1‑100                                                                                                                                                                                                              TAGTAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTgtcggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2393033‑2393130 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCGGATAAGCCGCCTTCGCGGTGCATCCGACACTACCCCCAGTCCGAAGAGAATTTTCTGTCGTGAGAATTCGTTGAAAATCCGGTCCTGACGGGACTTTTACAA  <  NC_000913/2393162‑2393057

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.