| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3296997 = | NA (NA) | 16 (0.110) | 11/168 | NT | NA | intergenic (+13/+101) | yraP/yraQ | outer membrane lipoprotein/putative inner membrane permease |
| ? | NC_000913 | 3297033 = | NA (NA) | noncoding (35/84 nt) | REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
TGAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATtacaa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3297095‑3296997‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACCAG > NC_000913/3297033‑3297135 TGAGGTAAAACATGTCGGATGCGGCGCAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTATGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATT < 2:2580401/100‑1TGAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATT > 2:4068378/1‑100TGAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATT > 2:2308860/1‑100TGAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATT > 1:2241595/1‑100 GAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATTA < 1:2046182/100‑1 GAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATT > 2:2482599/1‑99 AGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATTAC > 2:2302222/1‑100 AGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATTAC < 1:3965312/100‑1 AGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATTA > 1:2177440/1‑99 GGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATTACA > 1:1133741/1‑100 GGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATTACA > 2:2841510/1‑100 GGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATTACA > 1:804805/1‑100 GGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATTACA > 1:725558/1‑100 GGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATTACA < 1:3658214/100‑1 GGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATTACA < 1:3160343/100‑1 GGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATTACA > 1:2625133/1‑100 GGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATTACA > 1:177177/1‑100 GGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATTA > 1:3957700/1‑98 GGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAAGCATTACA > 2:3467872/1‑100 GGGAAAACATGTAGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATTACA > 1:2719361/1‑100 GGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATTACAA > 1:1201467/1‑100 GAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATTACAA > 2:2829765/1‑99 GGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCG > 1:3804788/1‑100 GTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATG > 1:1531584/1‑100 TATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATG > 1:865599/1‑99 ATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTT > 1:2051671/1‑100 GTAGGCCTGATAAGCCGCGGCAAGCGTCGCATCAGGC‑CTACAACGATACAAACCGTAGGTCCGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTC > 2:1747335/1‑100 GTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCT > 1:233052/1‑100 GTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCT > 2:886784/1‑100 AGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGC‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTGCGCCGCATCCGACATGTTTTCCCTCAA > 2:2976702/1‑100 GGCCTGATAAGACGCGGCAAGCGTCGCATCAGGC‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAA > 1:817792/1‑100 GCCTGATAAGACGCGGCAAGCGTCGCATCAGGC‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAAT > 1:2699529/1‑100 GCCTGATAAGACGCGGCAAGCGTCGCATCAGGC‑CTACAACGATACAAACCGTAGCTCAGATAAGGCGTCTACGCCGCATCCGACATGTTTTCCCTCccat > 2:2026620/1‑96 CCTGATAAGACGCGGCAAGCGTCTTATCAGGC‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATC > 2:2671266/1‑100 CCTGATAAGACGCGGCAAGCGTCGCATCCGGC‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAAT > 2:3272944/1‑99 CCTGATAAGACGCGGCAAGCGTCGCATCAGGC‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATC > 2:4091680/1‑100 TGATAAGACGCGGCAAGCGTCGCATCAGGC‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAG > 1:3512794/1‑100 ATAAGACGCGGCAAGCGTCTTATCAGGC‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAA > 1:1086604/1‑100 TACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACAC > 2:3141057/1‑100 ACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACC > 1:2105193/1‑100 ACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACC > 2:2194462/1‑100 CAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACCA > 2:1794161/1‑100 CAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACCA < 2:1100079/100‑1 AACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACCAG < 1:3081071/100‑1 TGAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATtacaa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3297095‑3296997‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACCAG > NC_000913/3297033‑3297135 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |