New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3313257 =	NA (NA)	8 (0.060)	6/166	NT	NA	noncoding (6/77 nt)	REP242 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP242 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	3313287 =	NA (NA)					noncoding (36/77 nt)	REP242 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP242 (repetitive extragenic palindromic) element; contains 2 REP sequences

CCAACGTACCATTGCTTAAGGTTTTTAGGGTTCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3313360‑3313257 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAGCAATGGTACGTTGGATCTCGATGATTTCGAATACTTCGA  >  NC_000913/3313287‑3313385                                                                                                                                                                                                             CCAACGTACCATTGCTTAAGGTTTTTAGGGTTCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTAT                                                                                                         >  1:3896022/1‑100  CAACGTACCATTGCTTAAGGTTTTTAGGGTTCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATC                                                                                                        <  2:1016257/100‑1  CAACGTACCATTGCTTAAGGTTTTTAGGGTTCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATC                                                                                                        <  2:1123447/100‑1  CAACGTACCATTGCTTAAGGTTTTTAGGGTTCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATC                                                                                                        <  1:1403987/100‑1  CAACGTACCATTGCTTAAGGTTTTTAGGGTTCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTAT                                                                                                         >  2:868605/1‑99   AACGTACCATTGCTTAAGGTTTTTAGGGTTCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATCA                                                                                                       <  2:3895997/100‑1   AACGTACCATTGCTTAAGGTTTTTAGGGTTCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATCA                                                                                                       <  2:2331122/100‑1    ACGTACCATTGCTTAGGGTTTTTAGGGTTCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATCAG                                                                                                      <  1:4075254/100‑1    ACGTACCATTGCTTAAGGTTTTTAGGGTTCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATCAG                                                                                                      <  1:1633187/100‑1    ACGTACCATTGCTTAAGGTTTTTAGGGTTCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATCAG                                                                                                      >  1:2726466/1‑100     CGTACCATTGCTTAAGTTTTTTGGGTTTCCATCCGGGAT‑AGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATCAGG                                                                                                     <  1:2113148/99‑1     CGTACCATTGCTTAAGGTTTTTAGGGTTCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATCAGG                                                                                                     <  1:3279774/100‑1       TACTATTGCTTAAGGTTTTTAGGGTTCTATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATCAGG                                                                                                     <  1:2558945/98‑1                                                                 GCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATCAGGCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAG                                         >  2:1146276/1‑100                                                                   ATGGATTGCCTGATGTGACGCTGGCGCGTCTTATCAGGCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAGCA                                       >  2:449831/1‑100                                                                        TTGCCTGATGTGACGCTGGCGCGTCTTATCAGGCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAGCAATGGT                                  >  1:199720/1‑100                                                                         TGCCTGATGTGACGCTGGCGCGTCTTATCAGGCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAGCAATGGTA                                 >  1:1362842/1‑100                                                                          GCCTGATGTGACGCTGGCGCGTCTTATCAGGCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAGCAATGGTAC                                >  1:934920/1‑100                                                                          GCCTGATGTGACGCTGGCGCGTCTTATCAGGCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAGCAATGGTAC                                >  2:1243305/1‑100                                                                          GCCTGATGTGACGCTGGCGCGTCTTATCAGGCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAGCAATGGTAC                                >  2:2348964/1‑100                                                                           CCTGATGTGACGCTGGCGCGTCTTATCAGGCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAGCAATGGTACG                               >  2:1663579/1‑100                                                                                                   ATCAGGCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAACACCTTAAGCAATGGTACGTTGGATCTCGATGATTTCGAATAC       >  2:958866/1‑100                                                                                                   ATCAGGCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAGCAATGGTACGTTGGATCTCGATGATTTCGAATAC       >  2:2793285/1‑100                                                                                                   ATCAGGCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAGCAATGGTACGTTGGATCTCGATGATTTCGAATAC       >  1:1149240/1‑100                                                                                                   ATCAGGCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAGCAATGGTACGTTGGATCTCGATGATTTCGAATAC       >  1:17726/1‑100                                                                                                    TCAGGCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAGCAATGGTACGTTGGATCTCGATGATTTCGAATACT      >  1:4071258/1‑100                                                                                                    TCAGGCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAGCAATGGTACGTTGGATCTCGATGATTTCGAATACT      >  1:3030172/1‑100                                                                                                    TCAGGCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAGCAATGGTACGTTGGATCTCGATGATTTCGAATACT      <  1:101470/100‑1                                                                                                     CAGGCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAGCAATGGTACGTTGGATCTCGATGATTTCGAATACTT     <  1:641712/100‑1                                                                                                      AGGCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAGCAATGGTACGTTGGATCTCGATGATTTCGAATACTTC    <  1:603898/100‑1                                                                                                      AGGCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAGCAATGGTACGTTGGATCTCGATGATTTCGAATACTTC    <  2:1235380/100‑1                                                                                                      AGGCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAGCAATGGTACGTTGGATCTCGATGATTTCGAATACTTC    <  1:3517374/100‑1                                                                                                      AGGCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAGCAATGGTACGTTGGATCTCGATGATTTCGAATACTTC    >  1:3382146/1‑100                                                                                                       GGCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAGCAATGGTACGTTGGATCTCGATGATTTCGAATACTTCG   >  2:194202/1‑100                                                                                                       GGCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAGCAATGGTACGTTGGATCTCGATGATTTCGAATACTTCG   >  1:3250426/1‑100                                                                                                       GGCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAGCAATGGTACGTTGGATCTCGATGATTTCGAATACTTCG   <  2:3581001/100‑1                                                                                                       GGCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAGCAATGGTACGTTGGATCTCGATGATTTCGAATACTTCG   >  1:160023/1‑100                                                                                                        GCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAGCAATGGTACGTTGGATCTCGATGATTTCGAATACTTCGA  <  1:2331135/100‑1                                                                                                        GCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAGCAATGGTACGTTGGATCTCGATGATTTCGAATACTTCGA  <  1:1777878/100‑1                                                                                                                                                                                                             CCAACGTACCATTGCTTAAGGTTTTTAGGGTTCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3313360‑3313257 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggCAATCCATGCCGGATGCAGCGTAAACGCCTTATCCCGCATGGAACCCTAAAAACCTTAAGCAATGGTACGTTGGATCTCGATGATTTCGAATACTTCGA  >  NC_000913/3313287‑3313385

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.