New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3546221NA (NA)12 (0.090) 8/166 NT NA intergenic (+22/‑338) nfuA/gntT Fe/S biogenesis protein, putative scaffold/chaperone protein/gluconate transporter, high‑affinity GNT I system
?NC_000913 = 3546253 NA (NA)noncoding (32/36 nt) REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences

TGCTGAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTgcccga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3546123‑3546221
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGCACACC  <  NC_000913/3546253‑3546149
                                                                                                                                                                                                            
TGCTGAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTG                                                                                                          >  1:324730/1‑100
 GCTGAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGC                                                                                                         <  2:1816037/100‑1
 GCTGAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGC                                                                                                         >  2:1825039/1‑100
 GCTGAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGC                                                                                                         >  1:4031343/1‑100
 GCTGAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGC                                                                                                         <  2:3740277/100‑1
 GCTGAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGC                                                                                                         <  2:3822925/100‑1
 GCTGAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGC                                                                                                         >  1:1355931/1‑100
  CTGAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCC                                                                                                        <  2:2025734/100‑1
  CTGAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCC                                                                                                        >  2:2385317/1‑100
   TGAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCC                                                                                                       >  2:850295/1‑100
   TGAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCC                                                                                                        <  2:273044/99‑1
    GAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCG                                                                                                      >  1:2454067/1‑100
    GAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCG                                                                                                      >  2:3362783/1‑100
    GAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCG                                                                                                      >  1:389232/1‑100
    GAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCC                                                                                                       >  2:247523/1‑99
     AACGAATTCCCGGAGCTGAAAGGTGTGCGCTATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGA                                                                                                     <  1:3901928/100‑1
     AACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCG                                                                                                      <  2:4017715/99‑1
     AACCAATCCCCGGCGCTGAAACGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCC                                                                                                       <  2:3384970/98‑1
      ACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATGGCCCG                                                                                                      >  2:2643262/1‑98
                       AAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGAAATGACGCTTTAGCGTCG                                                                                   <  1:1666895/100‑1
                              TGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTTTAGCGTCGCATCGGG                                                                            <  1:4109088/100‑1
                               GCGCGATCTCACCGAACATCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGAAATGACGCTTTAGCGTCGCATCGGG                                                                            <  2:2017232/99‑1
                               GCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGAAATGACGCTTTAGCGTCGCATCGGGC                                                                           <  1:4048848/100‑1
                                CGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTATGTTATCCCCTCTTTTGTAGATTGCCCGAAATGACGCTTTAGCGTCGCATCGGGC                                                                           <  2:1619442/99‑1
                                CGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGAAATGACGCTTTAGCGTCGCATCGGGCA                                                                          <  1:825270/100‑1
                                   GATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGAAATGACGCTTTAGCGTCGCATCGGGCAATC                                                                       <  1:1221082/100‑1
                                   GATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGAAATGACGCTTTAGCGTCGCATCGGGCAATC                                                                       <  1:2755148/100‑1
                                      CTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTAC                                                                    <  1:2184676/100‑1
                                      CTCACCGAACACCAGCGAGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTAC                                                                    <  1:2329126/100‑1
                                       TCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACA                                                                   <  1:1968342/100‑1
                                        CACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAA                                                                  <  1:1468870/100‑1
                                                                                                   GCCCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGC       <  2:4120070/100‑1
                                                                                                   GCCCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGC       <  2:3170469/100‑1
                                                                                                    CCCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGCA      >  1:114408/1‑100
                                                                                                    CCCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGCA      >  2:1924151/1‑100
                                                                                                    CCCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGCA      >  2:1036084/1‑100
                                                                                                    CCCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGCA      >  1:3792623/1‑100
                                                                                                    CCCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTGAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGC       <  2:2858057/99‑1
                                                                                                    CCCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAACAGGGGCTAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGCA      >  2:3990852/1‑100
                                                                                                     CCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGCAC     <  2:3671223/100‑1
                                                                                                     CCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGCAC     >  1:3202817/1‑100
                                                                                                     CCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGCAC     >  2:1491101/1‑100
                                                                                                      CGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGCAC     <  2:3888626/99‑1
                                                                                                       GAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGCACAC   >  1:2875197/1‑100
                                                                                                       GAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGCACA    >  2:1775840/1‑99
                                                                                                       GAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGCA      >  2:1775541/1‑97
                                                                                                        AAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGCACACC  <  1:69613/100‑1
                                                                                                                                                                                                            
TGCTGAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTgcccga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3546123‑3546221
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCGAAATGACGCTTTAGCGTCGCATCGGGCAATCTACAAAAGAGGGGATAACTTAGTAGTAGGAGTGTTCGCCGCGCTGGTGTTCGGTGAGATCGCGCACACC  <  NC_000913/3546253‑3546149

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.