| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3962704 = | NA (NA) | 12 (0.090) | 8/166 | NT | NA | noncoding (5/36 nt) | REP286 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP286 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 3962736 = | NA (NA) | intergenic (+38/+9) | rep/gpp | DNA helicase and single‑stranded DNA‑dependent ATPase/guanosine pentaphosphatase/exopolyphosphatase | |||||
AGAGATTATTGCTCAGGAAAGCCAGTGGCAGAGCTATGTCCACTGGCCGCTGGAAGTGCATTAATGAGTAAGTGCCGGATGCGATGCTGACGCATCTTTTCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3962808‑3962704‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggcACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACTGGCTTTCCTGAGCAATAATCTCTTTACCCAGCGGATGTTGGGTTAGCC > NC_000913/3962736‑3962833 AGAGATTATTGCTCAGGAAAGCCAGTGGCAGAGCTATGTCCACTGGCCGCTGGAAGTGCATTAATGAGTAAGTGCCGGATGCGATGCTGACGCATCTTTT > 2:2347862/1‑100AGAGATTATTGCTCAGGAAAGCCAGTGGCAGAGCTATGTCCACTGGCCGCTGGAAGTGCATTAATGAGTAAGTGCCGGATGCGATGCTGACGCATCTTTT < 1:3814257/100‑1 GAGATTATTGCTCAGGAAAGCCAGTGGCAGAGCTATGTCCACTGGCCGCTGGAAGTGCATTAATGAGTAAGTGCCGGATGCGATGCTGACGCATCTTTTC > 1:1736852/1‑100 GAGATTATTGCTCAGGAAAGCCAGTGGCAGAGCTATGTCCACTGGCCGCTGGAAGTGCATTAATGAGTAAGTGCCGGATGCGATGCTGACGCATCTTTTC < 1:2294207/100‑1 GAGATTATTGCTCAGGAAAGCCAGTGGCAGAGCTATGTCCACTGGCCGCTGGAAGTGCATTAATGAGTAAGTGCCGGATGCGATGCTGACGCATCTTTTC < 2:1909010/100‑1 GAGATTATTGCTCAGGAAAGCCAGTGGCAGAGCTATGTCCACTGGCCGCTGGAAGTGCATTAATGAGTAAGTGCCGGATGCGATGCTGACGCATCTTTTC < 2:1467456/100‑1 GATTATTGCTCAGGAAAGCCAGTGGCAGAGCTATGTCCACTGGCCGCTGGAAGTGCATTAATGAGTAAGTGCCGGATGCTATGCTGACGCATCTTTTCCG < 2:2525708/100‑1 GATTATTGCTCAGGAAAGCCAGTGGCAGAGCTATGTCCACTGGCCGCTGGAAGTGCATTAATGAGTAAGTGCCGGATGCGATGCTGACGCATCTTTTCCG > 1:1998524/1‑100 GATTATTGCTCAGGAAAGCCAGTGGAAGAGCTATGTCCACTGGCCGCTGGAAGTGCATTAATGAGTAAGGGCCGGATGCGATGCTGACGCATCTTTTCCG > 2:2926967/1‑100 GATTATTGCTCAGCAAAGCCAGTGGCAGAGCAATGTCCACTGACCGCTGGAAGTGCATTAATGAGTAAGTGCCGGATGCGATGCTGACGCATCTTTTCCG > 1:2791315/1‑100 agTATTGCTCAGGAAAGCCAGTGGCAGAGCTATGTCCACTGGCCGCTGGAAGTGCATTAATGAGTAAGTGCCGGATGCGATGCTGACGCATCTTTTCCGG < 2:3929346/98‑1 TTATTGCTCAGGAAAGCTAGTGCCAGATCTATGTGCACTGGCCGCTGGAAGTGCATTAATGAGTAGGTGCCGGATGCGATGCTGACGCATCTTTTCCGG < 2:3445169/99‑1 TTATTGCTCAGGAAAGCCAGTGGCAGAGCTATGTCCACTGGCCGCTGGAAGTGCATTAATGAGTAAGTGCCGGATGCGATGCTGACGCATCTTTTCCGGC < 1:4056823/100‑1 TTATTGCTCAGGAAAGCCAGTGGCAGAGCTATGTCCACTGGCCGCTGGAAGTGCATTAATGAGTAAGTGCCGGATGCGATGCTGACGCATCTTTTCCGGC < 2:3792697/100‑1 ATGAGTAAGTGCCGGATGCGATGCTGACGCATCTTTTCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACTGGCTTTCC > 1:32484/1‑100 ATGAGTAAGTGCCGGATGCGATGCTGACGCA‑‑‑‑‑TCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACTGGCTTTCCTGAGC > 1:4137678/1‑100 TGAGTAAGTGCCGGATGCGATGCTGACGCATCTTTTCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACTGGCTTTC > 2:3701445/1‑98 GTAAGTGCCGGATGCGATGCTGACGCATCTTTTCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACTGGCTTTCCTGAG > 1:1615010/1‑100 AAGTGCCGGATGCGATGCTGACGCATCTTTTCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACTGGCTTTCCTGAGCA > 1:97339/1‑100 AGTGCCGGATGCGATGCTGACGCATCTTTTCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACTGGCTTTCCTGAGCAA > 2:3708287/1‑100 AGTGCCGGATGCGATGCTGACGCATCTTTTCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACTGGCTTTCCTGAGCAA > 1:3778530/1‑100 GCCGGATGCGATGCTGACGCATCTTTTCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACTGGCTTTCCTGAGCAATAA > 1:803986/1‑100 GCCGGATGCGATGCTGACGCATCTTTTCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACTGGCTTTCCTGAGCAA > 1:4096886/1‑97 CCGGATGCGATGCTGACGCA‑‑‑‑‑TCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACTGGCTTTCCTGAGCAATAATCTCTT > 1:2020029/1‑100 CCGGATGCGATGCTGACGCA‑‑‑‑‑TCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACTGGCTTTCCTGAGCAATAATCTCTT > 1:3390/1‑100 CGATGCTGACGCATCTTTTCAGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACTGGCTTTCCTGAGCAATAATCTCTTTA > 2:1890064/1‑100 agcgctgCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTTGACATAGCTCTGCCACTGGCTTACCTGAGCAATAATCTCTTTACCC < 2:3498239/84‑1 TCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACTGGCTTTCCTGAGCAATAATCTCTTTACCCAGCGGATGTTGGGTT < 1:657292/100‑1 CGGCTCTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACTGGCTTTCCTGAGCAATAATCTCTTTACCCAGCGGATGTTGGGTTAG > 2:3038532/1‑100 CGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACTGGCTTTCCTGAGCAATAATCTCTTTACCCAGCGGATGTTGGGTTAG > 1:2729150/1‑100 GCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACTGGCTTTCCTGAGCAATAATCTCTTTACCCAGCGGATGTTGGGTTAGCC < 1:197968/100‑1 CACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACTGGCTTTCCTGAGCAATAATCTCTTTACCCAGCGGATGTTGGGTTAGC < 2:1015799/98‑1 AGAGATTATTGCTCAGGAAAGCCAGTGGCAGAGCTATGTCCACTGGCCGCTGGAAGTGCATTAATGAGTAAGTGCCGGATGCGATGCTGACGCATCTTTTCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3962808‑3962704‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggcACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACTGGCTTTCCTGAGCAATAATCTCTTTACCCAGCGGATGTTGGGTTAGCC > NC_000913/3962736‑3962833 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |