New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3962704 =NA (NA)12 (0.090) 8/166 NT NA noncoding (5/36 nt) REP286 (repetitive extragenic palindromic) element; contains 1 REP sequences REP286 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 3962736 = NA (NA)intergenic (+38/+9) rep/gpp DNA helicase and single‑stranded DNA‑dependent ATPase/guanosine pentaphosphatase/exopolyphosphatase

Only 100 of 258 total aligned reads displayed.

GCGCAAAGTGGTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACTGGCTTTCCTGAGCAATAA  >  NC_000913/3962605‑3962803
                                                                                                   |                                                                                                   
gcgcAAAGTGGTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCAGCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAgg                                                                                                     <  2:3622200/100‑1 (MQ=255)
  gctaacccaacatccgctgggtaaagagattattgctcaggaaagccagtggcagagctatgtccactggccgctggaagtgcattaatgagtaagtg                                                                                                     <  2:1015799‑M1/1‑1 (MQ=255)
   cAAAGTGGTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCg                                                                                                  <  1:2468709/100‑1 (MQ=255)
   cAAAGTGGTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCg                                                                                                  >  1:2038060/1‑100 (MQ=255)
     aaGTGGTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGa                                                                                                <  2:4100066/100‑1 (MQ=255)
        tGGTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGaaaa                                                                                             >  1:943504/1‑100 (MQ=255)
         ggTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAg                                                                                            <  2:1834972/100‑1 (MQ=255)
         ggTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAg                                                                                            <  2:1585528/100‑1 (MQ=255)
          gTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGa                                                                                           <  1:1445090/100‑1 (MQ=255)
          gTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGa                                                                                           >  1:834834/1‑100 (MQ=255)
          gTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGa                                                                                           <  1:2120631/100‑1 (MQ=255)
          gTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGa                                                                                           <  1:1969952/100‑1 (MQ=255)
           tCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGAt                                                                                          <  2:612569/100‑1 (MQ=255)
           tCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGAGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGAt                                                                                          <  2:3968234/100‑1 (MQ=255)
            cAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGTGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATg                                                                                         >  2:3252904/1‑100 (MQ=255)
            cAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATg                                                                                         >  1:2591587/1‑100 (MQ=255)
            cAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCAGCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGa                                                                                           >  2:1464414/1‑98 (MQ=255)
             aGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATg                                                                                         >  2:560099/1‑99 (MQ=255)
               cgcCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGTGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGt                                                                                      <  2:3872213/100‑1 (MQ=255)
                 ccGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCa                                                                                    >  2:2688931/1‑100 (MQ=255)
                   gaagaaCGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAgc                                                                                  >  1:3624621/1‑100 (MQ=255)
                    aagaaCGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAgca                                                                                 <  2:2116167/100‑1 (MQ=255)
                      gaaCGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAgcatc                                                                               >  1:1567926/1‑100 (MQ=255)
                       aaCGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAgcatcg                                                                              <  1:2047092/100‑1 (MQ=255)
                       aaCGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAgcatcg                                                                              >  2:2769254/1‑100 (MQ=255)
                       aaCGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAgcatcg                                                                              <  1:3602930/100‑1 (MQ=255)
                       aaCGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAgcatcg                                                                              <  1:2363993/100‑1 (MQ=255)
                       aaCGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAgcatcg                                                                              <  1:186994/100‑1 (MQ=255)
                         aagagattattgctcaggaaagccagtggcagagctatgtccactggccgctggaagtgcattaatgagtaagtGCCGGA‑‑‑‑‑TGCGTCAGCATCGCATCCgg                                                                       >  1:2020029‑M1/75‑100 (MQ=255)
                          ggATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAgcatcgcat                                                                           <  2:3680669/100‑1 (MQ=255)
                           gATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAgcatcgcatc                                                                          >  2:1748817/1‑100 (MQ=255)
                              gCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCgg                                                                       >  2:2662806/1‑100 (MQ=255)
                               ttattgctcaggaaagccagtggcagagctatgtccactggccgctggaagtgcattaatgagtaagtGCCGGAAAAGATGCGTCAGCATCGCATCCGGc                                                                      >  1:803986‑M1/69‑100 (MQ=255)
                               cAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGc                                                                      >  1:2393161/1‑100 (MQ=255)
                               cAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGc                                                                      <  1:2284275/100‑1 (MQ=255)
                                 gAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCAc                                                                    >  1:2975368/1‑100 (MQ=255)
                                  ttgctcaggaaagccagtggcagagctatgtccactggccgctggaagtgcattaatgagtaagtGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACt                                                                   >  1:3778530‑M1/66‑100 (MQ=255)
                                  aaaGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACt                                                                   >  2:2970752/1‑100 (MQ=255)
                                   tgctcaggaaagccagtggcagagctatgtccactggccgctggaagtgcattaatgagtaagtGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACtt                                                                  >  1:97339‑M1/65‑100 (MQ=255)
                                   aaGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACtt                                                                  >  1:3570012/1‑100 (MQ=255)
                                     gggCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTAc                                                                >  1:601815/1‑100 (MQ=255)
                                       gCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCCGCATCGCATCCGGCACTTACTc                                                              >  2:1216932/1‑100 (MQ=255)
                                       gCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTc                                                              <  2:1084924/100‑1 (MQ=255)
                                        cAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCa                                                             <  1:1087918/100‑1 (MQ=255)
                                        cAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCa                                                             >  2:3063260/1‑100 (MQ=255)
                                        cAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCa                                                             >  1:506656/1‑100 (MQ=255)
                                         ggaaagccagtggcagagctatgtccactggccgctggaagtgcattaatgagtaagtGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCAt                                                            >  1:32484‑M1/59‑100 (MQ=255)
                                          aaGCCATCTGGCGAATCTGAAAGCGATGATGGCGGGAAAACGAGGGAAATAATTAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCAtt                                                           <  2:2287224/100‑1 (MQ=255)
                                          aaGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCAtt                                                           >  1:3946439/1‑100 (MQ=255)
                                           aGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCAttn                                                          <  1:1642252/100‑2 (MQ=255)
                                              cATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATg                                                       <  1:3307315/100‑1 (MQ=255)
                                                tCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCa                                                     <  1:1229855/100‑1 (MQ=255)
                                                tCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCCTCCGCATCGCATCCGGCACTTACTCATTAATGc                                                      <  2:2716722/99‑1 (MQ=255)
                                                  tGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCCGCATCGCATCCGGCACTTACTCATTAATGCAc                                                    >  1:1771885/1‑99 (MQ=255)
                                                     cGAATCTGACAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTcc                                                <  2:3510280/100‑1 (MQ=255)
                                                     cGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTcc                                                >  1:3823396/1‑100 (MQ=255)
                                                        aTCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGTACTTCCAGc                                             >  1:4041532/1‑100 (MQ=255)
                                                        aTCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTGCCAGc                                             <  2:150663/100‑1 (MQ=255)
                                                         tCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCg                                            >  1:2319724/1‑100 (MQ=255)
                                                          cTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCgg                                           <  2:106496/100‑1 (MQ=255)
                                                           tGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGc                                          >  2:517845/1‑100 (MQ=255)
                                                            gAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGcc                                         <  2:658710/100‑1 (MQ=255)
                                                            gAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGcc                                         >  1:3327210/1‑100 (MQ=255)
                                                             aaaGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCAGCACTTACTCATTAATGCACTTCCAGCGGCCa                                        >  1:4121183/1‑100 (MQ=255)
                                                              aaGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAg                                       >  1:2332601/1‑100 (MQ=255)
                                                              aaGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAg                                       <  2:241669/100‑1 (MQ=255)
                                                               aGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGt                                      <  1:1175708/100‑1 (MQ=255)
                                                                 cGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTgg                                    <  2:3304462/100‑1 (MQ=255)
                                                                 cGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTgg                                    <  2:3415539/100‑1 (MQ=255)
                                                                 cGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTgg                                    >  1:790849/1‑100 (MQ=255)
                                                                  gatgatGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGa                                   >  2:3992938/1‑100 (MQ=255)
                                                                  gatgatGGCGGCAAAACGAGGGAAATAATCAAGGCCAGAAAAGATGCGTCAGCATCGCATCCGGAACTTACTCATTAAGGCACTTCCAGCGGCCAGTGGa                                   <  2:2691355/100‑1 (MQ=255)
                                                                   atgatgGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGAc                                  <  1:137025/100‑1 (MQ=255)
                                                                    tgatgGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATTCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTgg                                    <  2:788062/97‑1 (MQ=255)
                                                                    tgatgGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACa                                 <  1:1639756/100‑1 (MQ=255)
                                                                    tgatgGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACa                                 <  1:2769270/100‑1 (MQ=255)
                                                                       tgGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTGCCAGCGGCCAGTGGACATAg                              >  1:2822726/1‑100 (MQ=255)
                                                                        ggcggcAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGc                             <  2:3140462/100‑1 (MQ=255)
                                                                        ggcggcAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGc                             >  1:1033453/1‑100 (MQ=255)
                                                                        ggcggcAAAACGAGGGAAATAATCAAGGCCGGAAAACATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAg                              <  2:2673059/99‑1 (MQ=255)
                                                                            gcAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTg                         <  2:2058374/100‑1 (MQ=255)
                                                                              aaaaCGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGcc                       <  1:1824632/100‑1 (MQ=255)
                                                                                aaCGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCAc                     >  2:3718970/1‑100 (MQ=255)
                                                                                aaCCAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCAc                     <  2:1352789/100‑1 (MQ=255)
                                                                                 aCGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACt                    >  1:1897763/1‑100 (MQ=255)
                                                                                 aCGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACt                    <  2:2010607/100‑1 (MQ=255)
                                                                                 aCGAGAGGAAGAATCAGGGCCGGAAAAGGTGCGTCAGCGTCGCAGCCGGCACTTACTCATTAATGCGCTTCCAGCGGCCAGTGGACATAGCTCTGCCACt                    <  2:2323175/100‑1 (MQ=255)
                                                                                    aGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACTGGc                 >  2:2860316/1‑100 (MQ=255)
                                                                                    aGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACTGGc                 <  1:2934671/100‑1 (MQ=255)
                                                                                    aGGGAAATAATCAAGGCCGGAAAAGATGCGTCACCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACTGGc                 <  2:1307828/100‑1 (MQ=255)
                                                                                      ggAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACTGGCtt               <  1:2170892/100‑1 (MQ=255)
                                                                                       gAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACTGGCttt              >  1:1259999/1‑100 (MQ=255)
                                                                                         aataatCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACTgagatcgg            >  1:2689200/1‑93 (MQ=255)
                                                                                           taatCAAGGCCTGAAAAGATGCGTCAGCATCGCACCCGGCACTTACCCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACTGGCTTTcc            <  2:347767/98‑1 (MQ=255)
                                                                                           taatCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACTGGCTTTCCtn          <  2:2949894/100‑2 (MQ=255)
                                                                                              tCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACTGGCTTTCCTGAGc       <  2:473781/100‑1 (MQ=255)
                                                                                              tCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACTGGCTTTCCTGAGc       <  1:1159178/100‑1 (MQ=255)
                                                                                              tCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACTAGCTTTCCTGAGc       <  1:2715400/100‑1 (MQ=255)
                                                                                               cAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACTGGCTTTCCTGAGc       <  2:586338/99‑1 (MQ=255)
                                                                                                   GCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACTGGCTTTCCTGAGCaataa  <  2:3792697‑M1/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
GCGCAAAGTGGTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTGCCACTGGCTTTCCTGAGCAATAA  >  NC_000913/3962605‑3962803

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.