New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4166489 =	NA (NA)	13 (0.090)	7/178	NT	NA	intergenic (+204/‑170)	murI/rrsB	glutamate racemase/16S ribosomal RNA of rrnB operon
	?	NC_000913	4208001 =	NA (NA)					intergenic (‑469/‑146)	purH/rrsE	IMP cyclohydrolase and phosphoribosylaminoimidazolecarboxamide formyltransferase/16S ribosomal RNA of rrnE operon

GTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCA‑‑‑‑‑GCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4166525‑4166489 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTG  >  NC_000913/4208001‑4208099                                                                                                                                               GTTAAAGAGCAGTGCCGCTTTGCTTTTTCTCA‑‑‑‑‑GCGGCACTGCTCTTTAACAATTTAGCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGT                                      >  2:2646515/1‑100    AAAGAGCAGTGCCGCTTCGCTTTTTCTCA‑‑‑‑‑GCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGC                                   >  1:1050514/1‑100       GAGCAGTGCCGCTTCGCTTTTTCTCA‑‑‑‑‑GCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAG                                >  2:3222801/1‑100         GCAGTGCCGCTTCGCTTTTTCTCA‑‑‑‑‑GCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGAC                              >  1:982123/1‑100          CAGTGCCGCTTTGCTTTTTCTCA‑‑‑‑‑GCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACG                             >  1:1886654/1‑100           AGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAA                                 >  1:1435971/1‑100           AGTGCCGCTTCGCTTTTTCTCA‑‑‑‑‑GCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGA                            >  1:1011133/1‑100            GTGCCGCTTCGCTTTTTCTCA‑‑‑‑‑GCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAA                           >  1:1823049/1‑100                                A‑‑‑‑‑GCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAA       <  1:1575049/100‑1                                A‑‑‑‑‑GCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAA       <  1:958183/100‑1                                A‑‑‑‑‑GCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAA       <  1:3817993/100‑1                                A‑‑‑‑‑GCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAA       >  2:1750906/1‑100                                A‑‑‑‑‑GCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCGCAA       >  2:516269/1‑100                                      nCGGCACTGCTCTTTAACAATTTATTAGACAATCTGTGTGGGCACTCGAAGATACGGCTTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAG      >  2:2599046/2‑100                                      atctCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAG      <  1:1801572/96‑1                                      GCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAG      <  2:117135/100‑1                                      GCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAG      <  1:649707/100‑1                                      GCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAG      >  2:1856223/1‑100                                      GCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAG      <  2:592330/100‑1                                      GCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAG      <  2:69006/100‑1                                      GCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAG      <  2:69225/100‑1                                       CGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGA     <  2:1349659/100‑1                                        nGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTATCGTCGCAAGAAGAAAAATGAATACAAAGTCTCAAGAG    >  2:3806274/2‑100                                        GGCACTGCTCTTTAACAATTTATCCGACAATCTGTGTGGGCACTAGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGA     >  2:4029496/1‑99                                        GGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAG    >  1:1588023/1‑100                                        GGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAG    >  2:487409/1‑100                                        GGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAG    <  1:4125915/100‑1                                        GGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAG    <  2:2428985/100‑1                                        GGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAG    <  1:774183/100‑1                                        GGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAG    >  2:1350586/1‑100                                        GGCACTGCTCTTTAACAATATATCAGACAATCTGTGTGGGAACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAG    <  2:3086871/100‑1                                         GCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGT   <  1:3215812/100‑1                                         GCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATACTTAACGTCGCAAGACGAAAAACGAATACCAAGTCTCAAGAG    >  1:707123/1‑99                                         GCACTGCACTTTAACAATTTCTCAGACAATCTGTGTGGGCACCCGAAGCTACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAG      <  2:1431466/97‑1                                          CACTGCTCTTTAACAATTTATCCGACAATCTCTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTG  <  2:2785037/100‑1                                          CACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATATGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTG  >  1:1923469/1‑100                                          CACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGat  >  2:1801559/1‑98                                          CACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTG  <  2:929624/100‑1                                          CACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTG  >  1:2764527/1‑100                                          CACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTG  <  1:3255818/100‑1                                          CACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTG  <  2:3028630/100‑1                                          CACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTG  >  2:2903017/1‑100                                          CACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTG  <  1:4016561/100‑1                                          CACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTG  <  1:604360/100‑1                                                                                                                                               GTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCA‑‑‑‑‑GCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4166525‑4166489 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTG  >  NC_000913/4208001‑4208099

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.