New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4554508NA (NA)11 (0.080) 9/164 NT NA noncoding (4/34 nt) REP346 (repetitive extragenic palindromic) element; contains 1 REP sequences REP346 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 4554538 NA (NA)noncoding (34/34 nt) REP346 (repetitive extragenic palindromic) element; contains 1 REP sequences REP346 (repetitive extragenic palindromic) element; contains 1 REP sequences

TTGACCAGTTTTCGTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4554410‑4554508
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTACAGGTGG  <  NC_000913/4554538‑4554433
                                                                                                                                                                                                             
TTGACCAGTTTTCGTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGG                                                                                                           <  2:1168543/100‑1
 TGACCAGTTTTCGTTTTTTTGTCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGC                                                                                                          <  1:321158/100‑1
  GACCAGTTTTCGTTTTTTTGCCCCCCTGTACGTGCCAAATTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTACAATTGCCCGTTGTAGGCC                                                                                                         >  2:1579841/1‑100
  GACCAGTTTTCGTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCC                                                                                                         <  2:1777132/100‑1
  GACCAGTTTTCGTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCC                                                                                                         >  1:902523/1‑100
    CCAGTTTTCGTTTTTTTGCTCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGG                                                                                                       >  2:3529773/1‑100
    CCAGTTTTCGTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGG                                                                                                       <  2:2221880/100‑1
    CCAGTTTTCGTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGG                                                                                                       <  2:3924862/100‑1
    CCAGTTTTCGTTTTTTTGCCCACCTGTACGTGCCAACGTCGAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGGAAAATTGCCCGGTGTAGGCCGG                                                                                                       <  2:3243669/100‑1
     CAGTTTTCGTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGA                                                                                                      <  1:2685333/100‑1
      AGTTTTCGTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGAT                                                                                                     >  2:3480850/1‑100
                      CCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATGCGGCGTGAACGCCTT                                                                                     >  2:1828536/1‑100
                         ACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATGCGGCGTGAACGCCTTATC                                                                                  <  1:1828549/100‑1
                          CCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATGCGGCGTGAACGCCTTATCC                                                                                 <  1:72112/100‑1
                          CCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATGCGGCGTGAACGCCTTATCC                                                                                 <  2:2327998/100‑1
                            TGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATGCGGCGTGAACGCCTTATCCGG                                                                               <  1:1438755/100‑1
                             GTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATGCGGCGTGAACGCCTTATCCGGC                                                                              <  2:1978214/100‑1
                             GTACGTGCCAACGTCCAGTGCGAATTGTATAGTTTGAGATTAACGGTGGCCGTAAAATTGCCCGTTGTAGGCCGGATGCGGCGTGAACGCCTTATCCGGC                                                                              <  2:1666730/100‑1
                              TACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATGCGGCGTGAACGCCTTATCCGGCC                                                                             <  2:870797/100‑1
                                           CCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAACGGGCAAT                                                                <  2:1834073/100‑1
                                                GCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAACGGGCAATTTTAC                                                           <  1:141672/100‑1
                                                                                         CCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGT                  >  2:889048/1‑100
                                                                                                  GGCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTA         >  2:439526/1‑100
                                                                                                   GCCGGATTCGGCGTGAACGCCTTATCCGGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTAC        >  1:3744329/1‑100
                                                                                                   GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAACACTGGAAGTTGGCACGTAC        >  1:2056911/1‑100
                                                                                                    CCGGATGCGGCGTGAACGCCTTATCCGGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTACA       >  2:1729408/1‑100
                                                                                                    CCGGATGCGGCGTGAACGCCTTATCCGGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTACA       <  2:1070590/100‑1
                                                                                                    CCGGATGCGGCGTGAACGCCTTATCCGGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTACA       >  1:68162/1‑100
                                                                                                    CCGGATGCGGCGTGAACGCCTTATCCGGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTACA       >  1:3485261/1‑100
                                                                                                    CCGGATGCGGCGTGAACGCCTTATCCGGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTACA       <  1:311732/100‑1
                                                                                                      GGATGCGGCGTGAACGCCTTATCCGGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTACAGG     <  2:1711796/100‑1
                                                                                                      GGATGCGGCGTGAACGCCTTATCCGGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTACAGG     >  2:3850237/1‑100
                                                                                                      GGATGCGGCGTGAACGCCTTATCCGGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTACAGG     >  1:2986587/1‑100
                                                                                                       GATGCGGCGTGAACGCCTTATCCGGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTACAGGT    <  2:575411/100‑1
                                                                                                       GATGCGGCGTGAACGCCTTATCCGGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATAACATTAGCACTGGAAGTTGGCACGTACAGGT    >  2:1746987/1‑100
                                                                                                         TGCGGCGTGAACGCCTTATCCGGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTACAGGTGG  >  2:844612/1‑100
                                                                                                                                                                                                             
TTGACCAGTTTTCGTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4554410‑4554508
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTACAGGTGG  <  NC_000913/4554538‑4554433

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.