New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	173504 =	NA (NA)	14 (0.100)	9/164	NT	NA	noncoding (1/85 nt)	REP13 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP13 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	173536 =	NA (NA)					noncoding (33/85 nt)	REP13 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP13 (repetitive extragenic palindromic) element; contains 2 REP sequences

GTTGTGATCCAGCATGGTTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGATTCGGGGCCGTTTGTAGGCCCGATAAGACGCGCCAGCGTCGCATCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/173608‑173504 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcgggcCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATC  >  NC_000913/173536‑173634                                                                                                                                                                                                              GTTGTGATCCAGCATGGTTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGATTCGGGGCCGTTTGTAGGCCCGATAAGACGCGCCAGCGTCGCAT                                                                                                          <  1:3280312/100‑1   TGTGATCCAGCATGGTTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGATTCGGGGGCGTTTGTAGGCCCGATAAGACGCGCCAGCGTCGCATCG                                                                                                        <  2:2544042/100‑1   TGTGATCCAGCATGGTTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGATTCGGGGCCGTTTGTAGGCCCGATAAGACGCGCCAGCGTCGCATCG                                                                                                        >  1:777771/1‑100   TGTGATCCAGCATGGTTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGATTCGGGGCCGTTTGTAGGCCCGATAAGACGCGCCAGCGTCGCATCG                                                                                                        >  1:4063906/1‑100   TGTGATCCAGCATGGTTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGATTCGGGGCCGTTTGTAGGCCCGATAAGACGCGCCAGCGTCGCATCG                                                                                                        >  2:1653631/1‑100    GTGATCCAGCATGGTTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGATTCGGGGCCGTTTGTAGGCCCGATAAGACGCGCCAGCGTCGCATCGG                                                                                                       >  1:3624466/1‑100    GTGATCCAGCATGGTTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGATTCGGGGCCGTTTGTAGGCCCGATAAGACGCGCCAGCGTCGCATCGG                                                                                                       >  1:2721223/1‑100    GTGATCCAGCATGGTTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGATTCGGGGCCGTTTGTAGGCCCGATAAGACGCGCCAGCGTCGCATCGG                                                                                                       <  2:2213628/100‑1    GTGATCCAGCATGGTTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGATTCGGGGCCGTTTGTAGGCCCGATAAGACGCGCCAGCGTCGCATCGG                                                                                                       >  1:311335/1‑100     TGATCCAGCATGGTTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGATTCGGGGCCGTTTGTAGGCCCGATAAGACGCGCCAGCGTCGCATCGGG                                                                                                      >  2:529834/1‑100     TGATCCAGCATGGTTTGTCGGATGCGGCATGAACGCCTTATCCGACCTACGATTCGGGGCCGTTTGTAGGCCCGATAAGACGCGCCAGCGTCGCATCGGG                                                                                                      <  1:1420904/100‑1      gagCCAGCATGGTTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGATTCGGGGCCGTTTGTAGGCCCGATAAGACGCGCCAGCGTCGCATCGGG                                                                                                      <  1:51902/96‑1      GATCCAGCATGGTTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGATTCGGGGCCGTTTGTAGGCCCGATAAGACGCGCCAGCGTCGCATCGGGC                                                                                                     >  2:2859486/1‑100      GATCCAGCATGGTTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGATTCGGGGCCGTTTGTAGGCCCGATAAGACGCGCCAGCGTCGCATCGGGC                                                                                                     <  1:194498/100‑1      GATCCAGCATGGTTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGATTCGGGGCCGTTTGTAGGCCCGATAAGACGCGCCAGCGTCGCATCGGGC                                                                                                     >  2:94628/1‑100        TCCAGCATGGTTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGATTCGGGGCCGTTTGTAGGCCCGATAAGACGCGCCAGCGTCGCATCGGG                                                                                                      <  2:3563375/97‑1                                        CCTTATCCGACCTACGATTCGGGGCCGTTTGTAGGCCCGATAAGACGCGCCAGCGTCGCATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGG                                                                   >  2:1640289/1‑100                                               CGACCTACGATTCGGGGCCGTTTGTAGGCCCGATAAGACGCGCCAGCGTCGCATCGGGCATACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCAC                                                            >  2:3751210/1‑100                                                                       TAGGCCCGATAAGACGCGCCAGCGTCGCATCGGGCCTACAAACGGCCCCGAATCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGG                                    >  1:199478/1‑100                                                                        AGGCCCGATAAGACGCGCCAGCGTCGCATCGGGCCTACAAACGGCCCCGAATCGTAGGGCGGATAAGGAGTTCACGCCGCATCCGACAAACCATGCTGGA                                   >  2:2124033/1‑100                                                                         GGCCCGATAAGACGCGCCAGCGTCGCATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGAT                                  >  1:968253/1‑100                                                                         GGCCCGATAAGACGCGCCAGCGTCGCATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGAT                                  >  1:419391/1‑100                                                                         GGCCCGATAAGACGCGCCAGCGTCGCATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGAT                                  >  1:2831034/1‑100                                                                          GCCCGATAAGACGCGCCAGCGTCGCATCGGGCGTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGAT                                  >  2:3290253/1‑99                                                                          GCCCGATAAGACGCGCCAGCGTCGCATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATC                                 >  1:932505/1‑100                                                                          GCCCGATAAGACGCGCCAGCGTCGCATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGA                                   >  2:635893/1‑98                                                                           CCCGATAAGACGCGCCAGCGTCGCATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCA                                <  1:1640301/100‑1                                                                            CCGATAAGACGCGCCAGCGTCGCATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCAC                               >  2:2363098/1‑100                                                                             CGATAAGACGCGCCAGCGTCGCATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCAC                               >  2:117344/1‑99                                                                              aATAAGACGCGCCAGCGTCGCATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCAC                               >  2:3524969/2‑98                                                                                                   ATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGC        >  1:1896757/1‑100                                                                                                   ATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGC        <  1:2375807/100‑1                                                                                                    TCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCA       <  2:129519/100‑1                                                                                                    TCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCA       <  1:3759542/100‑1                                                                                                    TCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCA       >  1:3686336/1‑100                                                                                                    TCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCA       <  2:1213668/100‑1                                                                                                     CGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAG      >  2:1237540/1‑100                                                                                                     CGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAG      <  1:2578245/100‑1                                                                                                     CGGGCCTACAAACGGCCCCGAATCGTAGGTCGGAGAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAG      <  2:3808326/100‑1                                                                                                      GGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGC     >  2:2054097/1‑100                                                                                                       GGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCA    <  2:1495753/100‑1                                                                                                        GCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCAT   >  1:4051114/1‑100                                                                                                         CCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATC  <  1:2950857/100‑1                                                                                                         CCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATC  <  1:3490202/100‑1                                                                                                         CCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATC  >  1:45337/1‑100                                                                                                         CCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACACGACGTGCAGCATC  >  2:3838259/1‑100                                                                                                                                                                                                              GTTGTGATCCAGCATGGTTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGATTCGGGGCCGTTTGTAGGCCCGATAAGACGCGCCAGCGTCGCATCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/173608‑173504 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcgggcCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATC  >  NC_000913/173536‑173634

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.