| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 392927 = | 95 (0.640) | 12 (0.090) | 7/166 | NT | 17.2% | noncoding (40/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | = 566835 | 27 (0.200) | noncoding (59/1258 nt) | IS3 | repeat region | |||||
TCAACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/393031‑392927‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgagtCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGATTACGGTTGCGCCTGTTACCGCGGCAACGTCCTGTGC < NC_000913/566835‑566738 TCAACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAG > 2:71985/1‑100TCAACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAG > 2:31943/1‑100TCAACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAG < 1:2458253/100‑1 atCGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTG < 2:2514326/98‑1 AACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTG < 2:3823919/100‑1 AACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTG < 1:166377/100‑1 AACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTG < 1:244165/100‑1 ACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATTGGCGTACAGGTTGTAATCTGATCTGACCCAGCAATAGTGGACACGCGGCTAGGTGA > 2:3502412/1‑100 CGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAG > 1:1142495/1‑100 CGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAG > 2:1396423/1‑100 CGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATTGGCGTACAGGTTGTAATCTAATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAG > 1:628729/1‑100 TTCACATCCAATACACCGCCGTTAGTTACGGTGATAGCCTTGGCGGACAGGTTGTAATCTGATCTTACCGAGCAAGAGTGGACACGCGGCTAAGT > 2:349786/1‑95 GTTACGGTGATAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCAC < 1:768637/100‑1 TACGGTGATAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTCAGTGAGTCACCTCTGACTGAGAGTTTACTCACTT < 2:3592831/100‑1 TACGGTGATAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTT < 1:1630060/100‑1 CGGTGATAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAG < 1:3633546/100‑1 GGTGATAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGC < 1:2427918/100‑1 GGTGATAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGC < 2:363934/100‑1 GTGATAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCC < 1:205463/100‑1 GTGATAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCC < 2:4092452/100‑1 GTGATAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCC < 1:1599035/100‑1 TGATAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCG < 1:183471/100‑1 gagAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTTAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCG < 1:1276462/96‑1 GATAGTATTGGCGTCCAGCTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCTCCTCTGCCTGAGAGTTTACTCACTTAGCCGC < 2:2426603/100‑1 GTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGATTACGGTTGCGCCTGTTACCGCGGCAACGTCCT > 2:3095562/1‑100 TGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGATTACGGTTGCGCCTGTTACCGCGGCAACGTCCTG < 1:329828/100‑1 TGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGATTACGGTTGCGCCTGTTACCGCGGCAACGTCCTG > 1:1356725/1‑100 TGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGATTACGGTTGCGCCTGTTACCGCGGCAACGTCCTG > 2:3265943/1‑100 TGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACGATTGCTGGGTAAGATCAGATTACGGTTGCGCCTGTTACCGCGGCAACGTCCTG < 2:968955/100‑1 GAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGATTACGGTTGCGCCTGTTACCGCGGCAACGTCCTGT < 1:1870698/100‑1 GAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGATTACGGTTGCGCCTGTTACCGCGGCAACGTCCTGT < 1:1047014/100‑1 GAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGAGTCCACTATTGCTGGGTAAGATCAGCTTACGGTTGCGCCTGTTACCGCGGCAACGTCCTGT > 2:2029087/1‑100 GTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGATTACGGTTGCGCCTGTTACCGCGGCAACGTCCTGTGC < 2:2826827/100‑1 GTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGATTACGGTTGCGCCTGTTACCGCGGCAACGTCCTGTGC < 1:1300878/100‑1 GTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGATTACGGTTGCACCTGTTACCGCGGCAACGTCCTGTGC < 2:3549924/100‑1 TCAACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/393031‑392927‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgagtCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGATTACGGTTGCGCCTGTTACCGCGGCAACGTCCTGTGC < NC_000913/566835‑566738 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |