| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 392927 = | 95 (0.640) | 12 (0.090) | 7/166 | NT | 17.2% | noncoding (40/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | = 566835 | 27 (0.200) | noncoding (59/1258 nt) | IS3 | repeat region | |||||
GTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCC > NC_000913/566736‑566910 | gtgCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTg < 1:1248408/100‑1 (MQ=255) gCACAGGACGTTGCCGCGGTAACAGGTGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGac < 2:3549924‑M2/100‑3 (MQ=255) gCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGac < 1:1300878‑M2/100‑3 (MQ=255) gCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGac < 2:2826827‑M2/100‑3 (MQ=255) cacaGGCCGTTGCCGCGGTACCAGGCGCAACCGTGATATGAGCTTACCGAGCAATAGTGGACACGCGGCTAAATGAGTAAACTCTCAGTCAGAGGTGACt > 2:1697977/1‑100 (MQ=18) cacaGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACAAGCGGCTAAGTGAGGAAACTCTCAGTCAGCGGCGa > 2:3847424/1‑98 (MQ=21) acaGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGactc < 1:1047014‑M2/100‑5 (MQ=255) acaGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGactc < 1:1870698‑M2/100‑5 (MQ=255) acaGGACGTTGCCGCGGTAACAGGCGCAACCGTAAGCTGATCTTACCCAGCAATAGTGGACTCGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGactc > 2:2029087‑M2/1‑96 (MQ=255) caGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATCGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGactca < 2:968955‑M2/100‑6 (MQ=255) caGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGactca > 1:1356725‑M2/1‑95 (MQ=255) caGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGactca > 2:3265943‑M2/1‑95 (MQ=255) caGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGactca < 1:329828‑M2/100‑6 (MQ=255) aGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGactcac > 2:3095562‑M2/1‑94 (MQ=255) aGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAAGAGTAGACACACGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTcac < 2:595817/100‑1 (MQ=18) ggACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcaca < 1:2123044/100‑1 (MQ=255) ggACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcaca < 2:1038321/100‑1 (MQ=255) ggACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcaca > 1:390629/1‑100 (MQ=255) ggACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcaca < 1:3900696/100‑1 (MQ=255) aCGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATg < 1:1865221/100‑1 (MQ=255) aCGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATg < 2:594622/100‑1 (MQ=255) aCGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATg > 1:3870436/1‑100 (MQ=255) aCGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATg < 1:3556578/100‑1 (MQ=255) aCGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATg < 1:2873160/100‑1 (MQ=255) gTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc < 2:3648097/100‑1 (MQ=255) gTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc > 1:3780364/1‑100 (MQ=255) gTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc < 1:2453056/100‑1 (MQ=255) ttGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACa < 1:3954682/100‑1 (MQ=255) tGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa > 2:5354/1‑100 (MQ=255) tGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGCGACTCACATGACaa > 1:3705195/1‑100 (MQ=255) gCCGCGGTAACAGGCGCAACCGTGGTGTGGGCTTGCCCAGCAGTAGTGGGCACGCGGCTAAGTGAGTAAACTCTCAGGCAGAGGTGACTCAGATGACa < 2:2435648/98‑1 (MQ=17) gCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaaa > 1:3108192/1‑100 (MQ=255) gcgGTATCGGGCGCAACCGTTATTTGATCTTACCCATCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTcacttagccgc < 2:3465089/97‑9 (MQ=9) gcgGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAAc < 2:2640126/100‑1 (MQ=255) ggTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAg < 2:3147161/100‑1 (MQ=255) gTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGt > 1:748301/1‑100 (MQ=255) tAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAGACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTa < 2:2539853/100‑1 (MQ=255) tAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTa < 1:2098717/100‑1 (MQ=255) aaCAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTAt < 1:1576340/100‑1 (MQ=255) cAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCa > 2:3766534/1‑100 (MQ=255) cAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCa > 1:2588724/1‑100 (MQ=255) cAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCa > 2:3470499/1‑100 (MQ=255) aGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCaa < 1:2210321/100‑1 (MQ=40) ggCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAAc > 1:2720732/1‑100 (MQ=40) ggCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAAc > 1:3536575/1‑100 (MQ=40) gcgcAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAAcc < 2:2940863/100‑1 (MQ=38) gcgcAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAAcc < 1:3024234/100‑1 (MQ=38) gcAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAg < 1:1914672/100‑1 (MQ=35) cAACCGTAATCTGATCTTACCCAGTAATAGTGGACACGCGGATAAGTGAGTAAACTCTCAGTCAGAGGTGAAAAAAAAAAAAAAAACAGTATCAAcc < 2:3518693/97‑1 (MQ=11) cAACCGTAATCTGATCTTAACCAGGAATAGTGGCCACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGCTGACTCACATGACAAAAACAGTATCAACCAGt > 2:1406911/1‑100 (MQ=11) aCCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaa < 2:2449590/100‑1 (MQ=32) aCCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaa > 1:243619/1‑100 (MQ=32) aCCGTAATCTGATCTTACCCAGAAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaa > 2:100144/1‑100 (MQ=17) cGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCCGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaaaa > 1:1345359/1‑100 (MQ=11) cGTAATCTGATCTTACCCAGAAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaaaa > 2:3676023/1‑100 (MQ=11) gcgGCTAAGTGAGTAAACTCTCAGGCAGAGGAGactcacttagccgcgtgtccactattgctgggtaagatcagattacaagctggacgccaatactatc < 2:2426603‑M2/100‑68 (MQ=255) cgGCTAAGTGAGTAAACTCTCAGTCAGAGGTGactcacttagccgcgtgtccactattgctgggtaagatcagattacaacctgtacgccaatactatca < 1:183471‑M2/100‑69 (MQ=255) cgGCTAAGTGAGTAAACTCTCAGTCAGAGGTGactaacttagccgcgtgtccactattgctgggtaagatcagattacaacctgtacgccaatactctc < 1:1276462‑M2/99‑68 (MQ=255) ggCTAAGTGAGTAAACTCTCAGTCAGAGGTGactcacttagccgcgtgtccactattgctgggtaagatcagattacaacctgtacgccaatactatcac < 1:1599035‑M2/100‑70 (MQ=255) ggCTAAGTGAGTAAACTCTCAGTCAGAGGTGactcacttagccgcgtgtccactattgctgggtaagatcagattacaacctgtacgccaatactatcac < 1:205463‑M2/100‑70 (MQ=255) ggCTAAGTGAGTAAACTCTCAGTCAGAGGTGactcacttagccgcgtgtccactattgctgggtaagatcagattacaacctgtacgccaatactatcac < 2:4092452‑M2/100‑70 (MQ=255) gCTAAGTGAGTAAACTCTCAGTCAGAGGTGactcacttagccgcgtgtccactattgctgggtaagatcagattacaacctgtacgccaatactatcacc < 2:363934‑M2/100‑71 (MQ=255) gCTAAGTGAGTAAACTCTCAGTCAGAGGTGactcacttagccgcgtgtccactattgctgggtaagatcagattacaacctgtacgccaatactatcacc < 1:2427918‑M2/100‑71 (MQ=255) gCTAAGTGAGTAAACTCTCAGTCAGAGGTGactcacttagccgcgtgtccactattgctgggtaagaggcactggcgtataggtcacctcggcagaaata < 2:1945244‑M2/100‑71 (MQ=255) gCTAAGTGAGTAAACTCTCAGTCAGAGGTGactcacttagccgcgtgtccactattgctgggtaagaggcactggcgtataggtcacctcggcagaaata < 1:3989742‑M2/100‑71 (MQ=255) gCTAAGTGAGTAAACTCTCAGTCAGAGGTGactcacttagccgcgtgtccactattgctgggtaagaggcactggcgtataggtcacctcggcagaaata < 1:385054‑M2/100‑71 (MQ=255) cTAAGTGAGTAAACTCTCAGTCAGAGGTGactcacttagccgcgtgtccactattgctgggtaagatcagattacaacctgtacgccaatactatcaccg < 1:3633546‑M2/100‑72 (MQ=255) cTAAGTGAGTAAACTCTCAGTCAGAGGTGactcacttagccgcgtgtccactattgctgggtaagaggcactggcgtataggtcacctcggcagaaatag < 1:1167385‑M2/100‑72 (MQ=255) tAAGTGAGTAAACTCTCAGTCAGAGGTGactcacttagccgcgtgtccactattgctgggtaagaggcactggcgtataggtcacctcggcagaaata < 1:1022954‑M2/98‑71 (MQ=255) aaGTGAGTAAACTCTCAGTCAGAGGTGactcacttagccgcgtgtccactattgctgggtaagatcagattacaacctgtacgccaatactatcaccgta < 1:1630060‑M2/100‑74 (MQ=255) aaGTGAGTAAACTCTCAGTCAGAGGTGactcactgagccgcgtgtccactattgctgggtaagatcagattacaacctgtacgccaatactatcaccgta < 2:3592831‑M2/100‑74 (MQ=255) aGTGAGTAAACTCTCAGTCAGAGGTGactcacttagccgcgtgtccactattgctgggtaagaggcactggcgtataggtcacctcgacagaaatagcat < 2:399794‑M2/100‑75 (MQ=255) gTGAGTAAACTCTCAGTCAGAGGTGactcacttagccgcgtgtccactattgctgggtaagatcagattacaacctgtacgccaatactatcaccgtaac < 1:768637‑M2/100‑76 (MQ=255) gTGAGTAAACTCTCAGTCAGAGGTGactcacttagccgcgtgtccactattgctgggtaagaggcactggcgtataggtcacctcggcagaaatagcatg < 1:522587‑M2/100‑76 (MQ=255) | GTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCC > NC_000913/566736‑566910 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |