New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 601044123 (0.830)23 (0.170) 11/160 NT 17.0% coding (2331/3144 nt) cusA copper/silver efflux system, membrane component
?NC_000913 = 601061 114 (0.860)coding (2348/3144 nt) cusA copper/silver efflux system, membrane component

TGTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/600939‑601044
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agctggcgcAGTGCCTGCGGACTATCGCGCCAGCTTTGCGGATAACGCAGATTAATTGGATAACGGGCAATCCCTTCCACCGTTTCGCCAACCATCGCCCCGCCCA  <  NC_000913/601061‑600965
                                                                                                                                                                                                           
TGTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAG                                                                                                          >  2:2579604/1‑99
 GTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCT                                                                                                        >  2:1436432/1‑100
 GTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCT                                                                                                        >  2:1160753/1‑100
  TGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTTGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTG                                                                                                       <  2:1527481/100‑1
  TGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTG                                                                                                       >  2:907103/1‑100
  TGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTG                                                                                                       >  1:3925280/1‑100
  TGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTG                                                                                                       >  1:387986/1‑100
  TGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTG                                                                                                       >  1:2008186/1‑100
  TGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTG                                                                                                       >  1:199417/1‑100
  TGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTG                                                                                                       >  1:1653223/1‑100
   GCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGG                                                                                                      >  1:1363250/1‑100
   GCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGG                                                                                                      >  1:1435347/1‑100
   GCAGTTGTTTGTGACTGCTGCGGGGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTG                                                                                                       <  2:859191/99‑1
    CAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGC                                                                                                     <  1:98306/100‑1
    CAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGC                                                                                                     >  1:2364851/1‑100
     AGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCG                                                                                                    <  1:2967575/100‑1
      GTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGC                                                                                                   >  2:2646202/1‑100
                         GTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCAGTGCCTGCGGACTATCGC                                                                                >  1:1873425/1‑100
                             GCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCAGTGCCTGCGGACTATCGCGCCA                                                                            <  2:3977685/100‑1
                              CGGGGGGAGGGTTGGCGGAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCAGTGCCTGCGGACTATCGCGCCAG                                                                           <  2:3929317/100‑1
                              CGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCAGTGCCTGCGTACTATCGCGCCgg                                                                           <  1:2804960/100‑3
                              CGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCAGTGCCTGCGGACTATCGCGCCAG                                                                           <  2:1400064/100‑1
                               GGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGTGCAGTGCCTGCGGACTATCGCGCCAGC                                                                          <  2:27951/100‑1
                               GGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCAGTGCCTGCGGACTATCGCGCCAGC                                                                          <  1:3623601/100‑1
                               GGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCAGTGCCTGCGGACTATCGCGCCAGC                                                                          <  1:3509133/100‑1
                               GGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCAGTGCCTGCGGACTATCGCGCCAGC                                                                          <  1:565135/100‑1
                               GGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCAGTGCCTGCGGACTATCGCGCCAGC                                                                          <  2:1873412/100‑1
                               GGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCAGTGCCTGCGGACTATCGCGCCAGC                                                                          <  1:637235/100‑1
                               GGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCAGTGCCTGCGGACTATCGCGCCAG                                                                           <  2:3641851/99‑1
                                GGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCAGTGCCTGCGGACTATCGCGCCAGCT                                                                         <  1:1763109/100‑1
                                 GGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCAGTGCCTGCGGACTATCGCGCCAGCTT                                                                        <  1:3153677/100‑1
                                 GGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCAGTGCCTGCGGACTATCGCGCCAGCTT                                                                        <  2:1693761/100‑1
                                  GCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCCGGCGCAGTGCCTGCGGACTATCGCGCCAGCTTT                                                                       <  2:422211/100‑1
                                    GATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCAGTGCCTGCGGACTATCGCGCCAGCTTTGC                                                                     <  1:639952/100‑1
                                    GATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCAGTGCCTGCGGACTATCGCGCCAGCTTTGC                                                                     <  1:16171/100‑1
                                    GATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCAGTGCCTGCGGACTATCGCGCCAGCTTTGC                                                                     <  1:316421/100‑1
                                      TGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCAGTGCCTGCGGACTATCGCGCCAGCTTTGCG                                                                    <  2:2911854/99‑1
                                      TGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCAAATTAATCTGCGTTATCCGCAAAGCTGGCGCAGTGCCTGCGGACTATCGCGCCAGCTTTGCGG                                                                   <  2:3064850/100‑1
                                       GGTTGGCGAAAGGGTGGAAGGGATGGCCCGTTATCCAGTTAATCTGCGTTATCCGCAAAGCTGGCGCAGTGCCTGCGGGCTATCGCGTCAGCTGTGCG                                                                    <  2:2148426/98‑1
                                                 ACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCAGTGCCTGCGGACTATCGCGCCAGCTTTGCGGATAACGCAGAT                                                        <  1:1060688/100‑1
                                                                                             cgggAGCTGGCGCAGTGCCTGCGGACTATCGCGCTAGCTTTGCGGATACCGCAGATTAATTGGATAACGGGCAATCCCTTCTACCGTTTCGCCAACCATC            <  2:2599774/96‑1
                                                                                                 AGCTGGCGCAGTGCCTGCGGACTATCGCGCCAGCTTTGCGGATAACGCAGATTAATTGTATAACGGGCAATCCCTTCCACCGTTTCGCCAACCATCGCCC        >  1:3101381/1‑100
                                                                                                 AGCTGGCGCAGTGCCTGCGGACTATCGCGCCAGCTTTGCGGATAACGCAGATTAATTGGATAACGGGCAATCCCTTCCACCGTTTCGCCAACCATCGCCC        >  1:1376460/1‑100
                                                                                                  GCTGGCGCAGTGCCTGCGGACTATCGCGCCAGCTTTGCGGATAACGCAGATTAATTGGATAACGGGCAATTCCTTCCACCGTTTCGCCAACCATCGCCCC       >  2:3237762/1‑100
                                                                                                   CTGGCGCAGTGCCTGCGGACTATCGCGCCAGCTTTGCGGATAACGCAGATTAATTGGATAACGGGCAATCCCTTCCACCGTTTCGCCAACCATCGCCCCG      >  1:574471/1‑100
                                                                                                   CTGGCGCAGTGCCTGCGGACTATCGCGCCAGCTTTGCGGATAACGCAGATTAATTGGATAACGGGCAATCCCTTCCACCGTTTCGCCAACCATCGCCCCG      <  1:3751299/100‑1
                                                                                                     GGCGCAGTGCCTGCGGACTATCGCGCCAGCTTTGCGGATAACGCAGATTAATTGGATAACGGGCAATCCCTTCCACCGTTTCGCCAACCATCGCCCCGCC    >  1:744208/1‑100
                                                                                                     GGCGCAGTGCCTGCGGACTATCGCGCCAGCTTTGCGGATAACGCAGATTAATTGGATAACGGGCAATCCCTTCCACCGTTTCGCCAACCATCGCCCCGCC    <  1:1300366/100‑1
                                                                                                      GCGCAGTGCCTGCGGACTATCGCGCCAGCTTTGCGGATAACGCAGATTAATTGGATAACGGGCAATCCCTTCCACCGTTTCGCCAACCATCGCCCCGCCC   <  2:316182/100‑1
                                                                                                       CGCAGTGCCTGCGGACTATCGCGCCAGCTTTGCGGATAACGCAGATTAATTGGATAACGGGCAATCCCTTCCACCGTTTCGCCAACCATCGCCCCGCCCA  >  1:3938324/1‑100
                                                                                                       CGCAGTGCCTGCGGACTATCGCGCCAGCTTTGCGGATAACGCAGATTAATTGGATAACGGGCAATCCCTTCCACCGTTTCGCCAACCATCGCCCCGCCCA  >  1:3817719/1‑100
                                                                                                                                                                                                           
TGTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/600939‑601044
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agctggcgcAGTGCCTGCGGACTATCGCGCCAGCTTTGCGGATAACGCAGATTAATTGGATAACGGGCAATCCCTTCCACCGTTTCGCCAACCATCGCCCCGCCCA  <  NC_000913/601061‑600965

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.