| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2729651 | 23 (0.160) | 27 (0.190) | 10/168 | NT | 44.0% | noncoding (1507/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 4209675 = | 47 (0.340) | noncoding (1529/1542 nt) | rrsE | 16S ribosomal RNA of rrnE operon | |||||
CCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGT > NC_000913/2729554‑2729750 | ccTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTAc > 2:592763/1‑100 (MQ=255) cTTGCTATTCACTTTTCATCAGATAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTAcc > 2:422569/1‑100 (MQ=255) cTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTAcc < 1:1473298/100‑1 (MQ=255) cTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTAcc > 1:3422843/1‑100 (MQ=255) cTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTAcc < 1:990786/100‑1 (MQ=255) tGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCACCCGCAGGTTCCCCTACGGTTACCtt > 2:3177229/1‑100 (MQ=255) tGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCtt > 2:1022372/1‑100 (MQ=40) gCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTg < 1:1959904/100‑1 (MQ=40) tATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAATGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGtt < 2:1931275/100‑1 (MQ=38) aTTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTa > 1:2812689/1‑100 (MQ=35) aTTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTa < 2:2605794/100‑1 (MQ=35) aTTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTa < 1:891383/100‑1 (MQ=35) aTTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTa < 1:2606473/100‑1 (MQ=35) ttCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTAc < 1:1098415/100‑1 (MQ=35) ttCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTAc > 1:301446/1‑100 (MQ=35) tCACTTTTCATCAGACAATCTGTGTTAGCACTGCAATGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTg < 2:1062487/95‑1 (MQ=16) tCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACg > 1:196384/1‑100 (MQ=33) tCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACg < 1:2691346/100‑1 (MQ=33) tCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACg < 2:4125320/100‑1 (MQ=33) tCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACg > 1:1508781/1‑100 (MQ=33) cACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTggatcacctcct > 1:3693047‑M1/1‑88 (MQ=255) cACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACg > 1:1668441/1‑99 (MQ=32) cACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGa > 1:2898747/1‑100 (MQ=32) aCTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGAc < 2:4076251/100‑1 (MQ=31) aCTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGAc < 1:1667313/100‑1 (MQ=31) aCTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGAc > 2:3100106/1‑100 (MQ=31) cTTTTCATCCGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACt < 2:2356119/100‑1 (MQ=11) cTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACt < 1:2944125/100‑1 (MQ=11) cTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACt < 2:1190448/100‑1 (MQ=11) cTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACt < 1:2089514/100‑1 (MQ=11) cTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGGACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACt < 2:1899828/100‑1 (MQ=11) caGACAATCTGTGTGAGCACTGCAAAGAACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGTAGGGGATCCTGCGGTTggatcacctccttaccttaaag < 1:2783846‑M1/100‑23 (MQ=255) aggTGATCCAACCGCAGGTTCCCCTACGGTTggatcacctccttaccttaaagaagcgttctttgaagtgctcacacagattgtctgatgaaaatgagca > 2:1421436‑M1/1‑31 (MQ=255) tGATCCAACCGCAGGTTCCCCTACGGTTggatcacctccttaccttaaagaagcgtactttgtagtgctcacacagattgtctgatagaaagtgaaaagc > 2:2309070‑M1/1‑28 (MQ=255) tGATCCAACCGCAGGTTCCCCTACGGTTggatcacctccttaccttaaagaagcgtactttgcagtgctcacacagattgtctgatgaaaagtgaatagc > 1:843645‑M1/1‑28 (MQ=255) gATCCAACCGCAGGTTCCCCTACGGTTggatcacctccttaccttaaagacgcgttctttgaagtgctcacacagattgtctgatgaaaatgagcagta > 2:3863177‑M1/1‑27 (MQ=255) gATCCAACCGCAGGTTCCCCTACGGTTggatcacctccttaccttaaagaagcgttctttgcagtgctcacacagattgtctgatagaaagtgaaaagca > 1:3414877‑M1/1‑27 (MQ=255) gATCCAACCGCAGGTTCCCCTACGGTTggatcacctccttaccttaaagaagcgtactttgcagtgctcacacagattgtctgatgaaaagtgaatagca > 2:3408893‑M1/1‑27 (MQ=255) gATCCAACCGCAGGTTCCCCTACGGTTggatcacctccttaccttaaagaagcgtactttgcagtgctcacacagattgtctgatgaaaagtgaatagca > 1:1707166‑M1/1‑27 (MQ=255) aTCCAACCGCAGGTTCCCCTACGGTTggatcacctccttaccttaaagaagcgttctttgcagtgctcacacagattgtctgataggaagtgaaaagcaa > 1:803282‑M1/1‑26 (MQ=255) aTCCAACCGCAGGTTCCCCTACGGTTggatcacctccttaccttaaagaagcgttctttgcagtgctcacacagattgtctgataggaagtgaaaagcaa > 1:141597‑M1/1‑26 (MQ=255) aTCCAACCGCAGGTTCCCCTACGGTTggatcacctccttaccttaaagaagcgttctttgaagtgctcacacagattgtctgatgaaaatgagcagtaaa > 2:992156‑M1/1‑26 (MQ=255) aTCCAACCGCAGGTTCCCCTACGGTTggatcacctccttaccttaaagaagcgtactttgtagtgctcacacagattgtctgatagaaagtgaaaagcaa > 1:1492893‑M1/1‑26 (MQ=255) tCCAACCGCAGGTTCCCCTACGGTTggatcacctccttaccttaaagaagcgttctttgaagtgctcacacagattgtctgatgaaaatgagcagtaaaa > 1:3907616‑M1/1‑25 (MQ=255) tCCAACCGCAGGTTCCCCTACGGTTggatcacctccttaccttaaagaagcgtactttgtagtgctcacacagattgtctgatagaaagtgaaaagcaag > 2:3953153‑M1/1‑25 (MQ=255) tCCAACCGCAGGTTCCCCTACGGTTggatcacctccttaccttaaagaagcgtactttgtagtgctcacacagattgtctgatagaaagtgaaaagcaag > 1:2744502‑M1/1‑25 (MQ=255) tCCAACCGCAGGTTCCCCTACGGTTggatcacctccttaccttaaagaagcgtactttgtagtgcccacacagattgtctgatagaaagtgaaaagaaag > 2:1952479‑M1/1‑25 (MQ=255) tCCAACCGCAGGTTCCCCTACGGTTggatcacctccttaccttaaagaagcgtactttgcagtgctcacacagattgtctgatgaaaagtgaatagcaag > 1:836273‑M1/1‑25 (MQ=255) ccAACCGCAGGTTCCCCTACGGTTggatcacctccttaccttaaagcagcgtaccttgtagtgctcacacagattgtctgatagaaagtgaaaagcaa > 2:475228‑M1/1‑24 (MQ=255) ccAACCGCAGGTTCCCCTACGGTTggatcacctccttaccttaaagaagcgttctttgcagtgctcacacagattgtctgataggaagtgaaaagcaa > 2:3090142‑M1/1‑24 (MQ=255) ccAACCGCAGGTTCCCCTACGGTTggatcacctccttaccttaaagaagcgttctttgcagtgctcacacagattgtctgatagaaagtgaaaagcaagg > 1:1524617‑M1/1‑24 (MQ=255) ccAACCGCAGGTTCCCCTACGGTTggatcacctccttaccttaaagaagcgttctttgcagtgctcacacagattgtctgatagaaagtgaaaagcaagg > 1:3471596‑M1/1‑24 (MQ=255) cAACCGCAGGTTCCCCTACGGTTggatcacctccttaccttaaagaagcgttctttgcagtgctcacacagattgtctgataggaagtgaaaagcaaggc > 2:1364847‑M1/1‑23 (MQ=255) cAACCGCAGGTTCCCCTACGGTTggatcacctccttaccttaaagaagcgtactttgtagtgctcacacagattgtctgatagaaagtgaaaagcaaggc > 1:623699‑M1/1‑23 (MQ=255) cAACCGCAGGTTCCCCTACGGTTggatcacctccttaccttaaagaagcgtactttgtagtgctcacacagattgtctgatagaaagtgaaaagcaaggc > 1:1328622‑M1/1‑23 (MQ=255) aaCCGCAGGTTCCCCTACGGTTggatcacctccttaccttaaagaagcgttctttgcagtgctcacacagattgtctgataggaagtgaaaagcaaggcg > 1:1749226‑M1/1‑22 (MQ=255) aaCCGCAGGTTCCCCTACGGTTggatcacctccttaccttaaagaagcgtactttgcagtgctcacacagattgtctgatgaaaagtgaatagcaagg > 1:3129013‑M1/1‑22 (MQ=255) cGGTTggatcacctccttaccttaaagaagcgttctttgcagtgctcacacagattgtctgatagaaagtgaaaagcaaggcgtcttgcgaagcagactg < 2:3318528‑M1/100‑96 (MQ=255) cGGTTggatcacctccttaccttaaagaagcgttctttgcagtgctcacacagattgtctgatagaaagtgaaaagcaaggcgtcttgcgaagcagactg > 2:2918516‑M1/1‑5 (MQ=255) ggTTggatcacctccttaccttaaagaagcgttctttgcagtgctcacacagattgtctgatagaaagtgaaaagcaaggcgtcttgcgaagcagactga < 1:3530248‑M1/100‑97 (MQ=255) ggTTggatcacctccttaccttaaagaagcgttctttgcagtgctcacacagattgtctgatagaaagtgaaaagcaaggcgtcttgcgaagcagactga > 1:2368888‑M1/1‑4 (MQ=255) gTTggatcacctccttaccttaaagaagcgttctttgcagtgctcacacagattgtctgatagaaagtgaaaagcaaggcgtcttgcgaagcagactgat > 1:1985094‑M1/1‑3 (MQ=255) ttggatcacctccttaccttaaagaagcgttctttgcagtgctcacacagattgtctgatagaaagtgaaaagcaaggcgtcttgcgaagcagactgata < 1:2671488‑M1/100‑99 (MQ=255) ttggatcacctccttaccttaaagaagcgttctttgcagtgctcacacagattgtctgatagaaagtgaaaagcaaggcgtcttgcgaagcagactgata < 2:505608‑M1/100‑99 (MQ=255) ttggatcacctccttaccttaaagaagcgttctttgcagtgctcacacagattgtcggatagaaagtgaaaagcaaggcgtcttgcgaagcagactgata < 2:3583614‑M1/100‑99 (MQ=255) tggatcacctccttaccttaaagaagcgttctttgcagtgctcacacagattgtctgatagaaagtgaaaagcaaggcgtcttgcgaagcagactgatac < 1:2550213‑M1/100‑100 (MQ=255) | CCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGT > NC_000913/2729554‑2729750 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |