New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2794135NA (NA)13 (0.090) 10/168 NT NA noncoding (108/136 nt) REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences
?NC_000913 = 2794163 NA (NA)noncoding (136/136 nt) REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences

Only 100 of 209 total aligned reads displayed.

CGACGCTGCGCGTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACA  >  NC_000913/2794036‑2794234
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cGACGCTGCGCGTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTg                                                                                                     <  2:868432/100‑1 (MQ=255)
  aCGCTGCGCGTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGgc                                                                                                   >  1:3173339‑M1/1‑98 (MQ=255)
   cgcgcagcgtcgcctccggcCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGc                                                                                                   <  2:3633993‑M2/79‑1 (MQ=255)
     cTGCGCGTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGgccgg                                                                                                <  2:1466937‑M1/100‑6 (MQ=255)
     cTGCGCGTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGgccgg                                                                                                >  1:2489840‑M1/1‑95 (MQ=255)
      tGCGCGACTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCggg                                                                                               <  1:1815696/100‑1 (MQ=255)
       gcgcGTCTTGTGCGGCCTACGGGGGTCCATGTCGGATAAGGCGTTTACGCCGCATCAGACAATCTGTACGTTAACAGGAAGAAATCTATGTTGGCCg                                                                                                 <  2:2028494/97‑1 (MQ=38)
        cgcgTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTa                                                                                             <  2:3006043/100‑1 (MQ=255)
        cgcgTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTa                                                                                             <  1:469717/100‑1 (MQ=255)
        cgcgTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTa                                                                                             >  2:3365214/1‑100 (MQ=255)
          cgTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAg                                                                                           <  1:1160326/100‑1 (MQ=255)
           gTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAgg                                                                                          >  2:2239467/1‑100 (MQ=255)
             cTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCg                                                                                        >  1:3033995/1‑100 (MQ=255)
               tGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCg                                                                                        >  2:973137/1‑98 (MQ=255)
               tGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGa                                                                                      >  2:3233684/1‑100 (MQ=255)
                gTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAg                                                                                     <  1:2311779/100‑1 (MQ=255)
                 tccggcCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGc                                                                                    <  2:2136686‑M2/94‑1 (MQ=255)
                 tccggcCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGc                                                                                    <  1:563502‑M2/94‑1 (MQ=255)
                  ccggcCTACGGGGATCCCGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGGGAACAGGACGAAATCTATGTTGGCCGGGTAAGGCGGAGc                                                                                    >  2:2494760‑M2/6‑99 (MQ=255)
                  ccggcCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGcc                                                                                   >  1:3800285‑M2/6‑100 (MQ=255)
                  ccggcCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGcc                                                                                   >  1:4026732‑M2/6‑100 (MQ=255)
                  ccggcCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGcc                                                                                   <  1:2658338‑M2/95‑1 (MQ=255)
                  ccggcCTACGGGGATCCAGCTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATCTTGGCCGGGTACGGCGGAGcc                                                                                   >  2:2611676‑M2/6‑100 (MQ=255)
                    ggcCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGc                                                                                 <  1:1719554‑M2/97‑1 (MQ=255)
                     gcCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGct                                                                                >  1:2273124‑M2/3‑100 (MQ=255)
                        tACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTC                                                                             >  1:3445042‑M2/1‑100 (MQ=255)
                         aCGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCC                                                                            >  1:2049049‑M2/1‑100 (MQ=255)
                           ggggATCCGGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGG                                                                          >  2:2684612‑M2/1‑100 (MQ=255)
                           ggggATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGG                                                                          <  1:3569642‑M2/100‑1 (MQ=255)
                           ggggATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGG                                                                          >  1:3955918‑M2/1‑100 (MQ=255)
                           ggggATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGG                                                                          >  1:797590‑M2/1‑100 (MQ=255)
                           ggggATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGG                                                                          >  1:2106290‑M2/1‑100 (MQ=255)
                            gggATCCAGGTCGGATAAGGCGTTTACGCCGCAGCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGC                                                                         >  2:1649620‑M2/1‑100 (MQ=255)
                             ggATCCGGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCa                                                                        <  1:4060940/100‑1 (MQ=255)
                             ggATCCAGGTCGGATAAGGCGTTGACGCCGCATACGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCa                                                                        <  2:1430549/100‑1 (MQ=255)
                               aTCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCaaa                                                                      >  1:1478434/1‑100 (MQ=255)
                                tCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGgccggagagcggctccgccttacccggccaac                                                                     <  1:3540385‑M1/100‑33 (MQ=255)
                                  cAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGgccggagagcggctccgccttacccggccaacat                                                                   <  1:202942‑M1/100‑35 (MQ=255)
                                  cAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAg                                                                   >  2:645481/1‑100 (MQ=255)
                                   aGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGa                                                                  <  1:1451749/100‑1 (MQ=255)
                                    ggTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGaa                                                                 >  1:1545047/1‑100 (MQ=255)
                                      tCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATc                                                               <  1:3618961/100‑1 (MQ=255)
                                       cGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATc                                                               >  1:3805992/1‑99 (MQ=255)
                                        ggATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGgccggagagcggctccgccttacccggccaacatagattt                                                             <  1:1512711‑M1/100‑41 (MQ=255)
                                        ggATAAGGCGTTGACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGgccggagagcggctccgccttacccggccaacatagattt                                                             <  1:1514024‑M1/100‑41 (MQ=255)
                                          aTAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATa                                                           <  1:3345930/100‑1 (MQ=255)
                                          aTAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATa                                                           <  1:2500666/100‑1 (MQ=255)
                                            aaGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAAc                                                         <  2:2357931/100‑1 (MQ=255)
                                              ggCGTTTGCGCAGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGGGGAGCCGCTCTCCGGCAAAAAGAATCAATAACaa                                                       >  2:2172637/1‑100 (MQ=255)
                                              ggCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCGATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACaa                                                       <  2:79454/100‑1 (MQ=255)
                                              ggCGTTTAAGCCGCATCAGACAGTCTGTATGTGAACAGGAAGAAATCTATGTTGCCCGGGTAAGGGGAAGCCGCTCTCCGGCAAAAAGAATCAATAACaa                                                       >  2:1014786/1‑100 (MQ=255)
                                                  tttACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATtat                                                   >  1:3712736/1‑100 (MQ=255)
                                                  tttACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATtat                                                   >  2:1567361/1‑100 (MQ=255)
                                                         cgcATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTg                                            <  2:1362864/100‑1 (MQ=255)
                                                          gcATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTg                                            <  2:651352/99‑1 (MQ=255)
                                                           cATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGa                                           >  2:2809167/1‑99 (MQ=255)
                                                            aTCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGAcc                                         >  1:2953197/1‑100 (MQ=255)
                                                             tCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGAccc                                        >  1:2160958/1‑100 (MQ=255)
                                                               cGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCTGGTAAGGCGGAGCCGCACTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCgg                                      <  2:3826196/100‑1 (MQ=255)
                                                               cGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCgg                                      >  1:1133672/1‑100 (MQ=255)
                                                                 aCAATCTGTACGTGAACAGGAAGAAATCTCTGTTGgccggagagcggctccgccttacccggccaacatagatttcttcctgttcacgtacagattgtcg                                    <  2:2489826‑M1/100‑66 (MQ=255)
                                                                  cAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGgcgc                                   >  1:3274036/1‑100 (MQ=255)
                                                                     tCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCggg                                <  2:215333/100‑1 (MQ=255)
                                                                     tCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCggg                                <  2:1042716/100‑1 (MQ=255)
                                                                      cggTACGTGAACCAGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGa                               <  2:3329679/98‑1 (MQ=255)
                                                                      cTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGa                               >  2:2947658/1‑100 (MQ=255)
                                                                           cGTGAACAGGAAGAAAGCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATg                           <  2:3568908/99‑1 (MQ=255)
                                                                            gTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTc                         <  1:287854/100‑1 (MQ=255)
                                                                              gAACCGGAAGAAATCTATGTGGGCCGGGTAAGGCGGAGCCGCGCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCgg                       <  1:1909671/100‑1 (MQ=255)
                                                                              gAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCgg                       <  2:2449014/100‑1 (MQ=255)
                                                                              gAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCgg                       >  2:3871974/1‑100 (MQ=255)
                                                                              gAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCGCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCgg                       <  2:504392/100‑1 (MQ=255)
                                                                                aCAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCgggg                     <  1:3047550/100‑1 (MQ=255)
                                                                                aCAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCgggg                     <  2:4057453/100‑1 (MQ=255)
                                                                                 cacgaagaaATCTATGTTCGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAAGAACAATTATACGCGTGACCCGGCGCGGGAAATGTCgggg                     <  2:2057224/96‑1 (MQ=255)
                                                                                 cAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGgc                    <  1:2203145/100‑1 (MQ=255)
                                                                                 cAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGgc                    <  1:2739825/100‑1 (MQ=255)
                                                                                  aGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGgcg                   <  2:1759587/100‑1 (MQ=255)
                                                                                  aGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGgcg                   <  2:3278432/100‑1 (MQ=255)
                                                                                   ggAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGgcgc                  <  2:43649/100‑1 (MQ=255)
                                                                                   ggAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGgcgc                  >  1:1412897/1‑100 (MQ=255)
                                                                                   ggAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGgcg                   >  2:2583262/1‑99 (MQ=255)
                                                                                    gaagaaATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGct                 >  1:688493/1‑100 (MQ=255)
                                                                                     aagaaATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGACAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGgcgc                  >  2:1713329/1‑98 (MQ=255)
                                                                                       gaaATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCtctc              <  1:832006/100‑1 (MQ=255)
                                                                                        ataTCTATGTTGGGCGGGTAAGGCGGAGCCGCCTTACGGCAAAAAGAATAAATAACAATTATACGCCAGACCCTGCGCGGGAAAt                            <  2:377768/83‑1 (MQ=255)
                                                                                         aaTCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTccc            <  1:499582/100‑1 (MQ=255)
                                                                                         aaTCTATGTTGACCGGGTAAGGCGGAGCCGCTCTCCGGCcaacatagatttcttcctgttcacgtacatattgtcgaatgcggcgtaaacgccttgtcc             <  2:1275570‑M2/99‑61 (MQ=255)
                                                                                          aTCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCccacatagatttcttcctgttcacgtacagcttgtcggatgcggcgtaaacgccttatccg            <  2:3118472‑M2/99‑62 (MQ=255)
                                                                                              aTGTTGGCCGGGTAAGGCGGAGCCGCGCTCCGGCAAAAAGAATCAATAACAATGATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTg       <  2:1903157/100‑1 (MQ=255)
                                                                                               tGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGa      >  1:2696364/1‑100 (MQ=255)
                                                                                                gTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCcaacatagatttcttcctgttcacgtacagattgtcggatgcggcgtaaacgccttatccgacctgga     <  1:2760271‑M2/100‑69 (MQ=255)
                                                                                                gTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCcaacatagatttcttcctgttcacgtacagattgtcggatgcggcgtaaacgccttatccgacctgga     <  2:4111336‑M2/100‑69 (MQ=255)
                                                                                                gTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGac     <  2:2718595/100‑1 (MQ=255)
                                                                                                gTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGac     <  2:2316792/100‑1 (MQ=255)
                                                                                                gTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGac     >  1:1032279/1‑100 (MQ=255)
                                                                                                 ttGGCCGGGTAAGGCGGAGCCGCTCTCCGGCcaacatagatttcttcctgttcacgtacagattgtcggatgcggcgtaaacgccttatccgacctggat    <  2:4064716‑M2/100‑70 (MQ=255)
                                                                                                  tGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGacac   >  1:320839/1‑100 (MQ=255)
                                                                                                  tGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGacac   <  2:1220100/100‑1 (MQ=255)
                                                                                                   ggCCGGGTAAGGCGGAGCCGCTCTCCGGCcaacatagatttcttcctgttcacgtacagattgtcggatgcggcgtaaacgccttatccgacctggatcc  <  2:253978‑M2/100‑72 (MQ=255)
                                                                                                   |                                                                                                   
CGACGCTGCGCGTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACA  >  NC_000913/2794036‑2794234

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.