| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3428910 = | 20 (0.140) | 13 (0.090) | 10/168 | NT | 40.8% | intergenic (‑148/‑326) | rrsD/yrdA | 16S ribosomal RNA of rrnD operon/bacterial transferase hexapeptide domain protein |
| ? | NC_000913 | = 4207974 | NA (NA) | intergenic (‑442/‑173) | purH/rrsE | IMP cyclohydrolase and phosphoribosylaminoimidazolecarboxamide formyltransferase/16S ribosomal RNA of rrnE operon | |||||
CTCTTGAGACTTGGTATTCATTTTTCGTCTTGCGACGTTAAGAATCCGTATCTTCGAGTGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTC > NC_000913/3428812‑3429009 | tgtgaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcgc > 1:114326‑M1/99‑100 (MQ=255)tgtgaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcgc < 1:574928‑M1/2‑1 (MQ=255)tgtgaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcgc < 1:861199‑M1/2‑1 (MQ=255)tgtgaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcgc < 2:2033651‑M1/2‑1 (MQ=255)tgtgaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcgc > 2:2437879‑M1/99‑100 (MQ=255)tgtgaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcgc < 1:1973645‑M1/2‑1 (MQ=255)tgtgaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcgc > 1:1762675‑M1/99‑100 (MQ=255)tgtgaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcgc > 1:1265976‑M1/99‑100 (MQ=255) tgaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcgcg < 2:3838993‑M1/3‑1 (MQ=255) tgaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGa < 1:1644830‑M1/4‑1 (MQ=255) tgaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGa < 1:1319938‑M1/4‑1 (MQ=255) tgaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGa < 2:1433855‑M1/4‑1 (MQ=255) tgaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGa < 1:427775‑M1/4‑1 (MQ=255) ttaagaCGTGGTACTCATTTTGCGTTCTGCGACGTTAACAATCCGTATCTTCGAGTGCCCACACAGATTGTCTGATAAATTGTTTAAGAGCAGTCGCGAc < 2:1620411/97‑1 (MQ=1) gaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGAc < 2:837381‑M1/5‑1 (MQ=255) gaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGAc > 2:2116992‑M1/96‑100 (MQ=255) gaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGAc < 1:1132646‑M1/5‑1 (MQ=255) gaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGAc > 1:1202284‑M1/96‑100 (MQ=255) gaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGAc < 1:4074998‑M1/5‑1 (MQ=255) acttcacacaaacagccggttcggttgacgagaaaaatcctcaacttcagggtcgactctgaaagaggaaagcgtaatatacgccacctcgcgacactg < 2:1165003‑M1/9‑5 (MQ=255) cacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTc < 2:726992‑M1/14‑1 (MQ=255) cggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTcg > 1:3059940‑M1/75‑100 (MQ=255) ggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCG‑CTTT‑AGCGCACTGTCGCGa > 1:99381‑M1/74‑100 (MQ=255) gttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTcgcg > 2:1740326‑M1/73‑100 (MQ=255) caacgaagagaaaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTCGCGAg > 1:3183545‑M1/71‑100 (MQ=255) cggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTCGCGAgg > 1:1352442‑M1/70‑100 (MQ=255) aacgaagagaaaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTCGCGAgg > 1:813751‑M1/70‑100 (MQ=255) aacgaagagaaaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTCGCGAgg > 1:2444643‑M1/70‑100 (MQ=255) ggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTCGCGAGGt > 1:2666521‑M1/69‑100 (MQ=255) ttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTgg > 1:832035‑M1/67‑100 (MQ=255) gaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCg > 1:726998‑M1/65‑100 (MQ=255) aaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTa > 2:4126268‑M1/58‑100 (MQ=255) agcgCCCACTCAGCTTGTCTGATATATTGTTAAATTGCAGTTGCGACGCGGCTTTCAGCTCACGGTCGCGAGGTGGCGTATATGACGCTTTCCTCGTTc < 2:795959/96‑1 (MQ=1) cctacacaGATTGTCTGATGAATTGTTAAAGAGCAGTTGCGACGCGTCTTTCAGCTCACTGTCGCGAGGTCGTGTATATTAAGCTTTCATCTTTCAGAGt > 2:1778293/4‑100 (MQ=1) gaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTg > 2:299599‑M1/31‑100 (MQ=255) gTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACTCTTTCCTCTTTCATAGTCAACCCTGAATTTCAGGAtttttt > 2:2217645/1‑100 (MQ=2) gTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGAtttttt < 2:1682524/100‑1 (MQ=11) gTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGAtttttt > 1:719759/1‑100 (MQ=11) gTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGGCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGAtttttt > 2:3675585/1‑100 (MQ=11) ttaccgcgCAGTTGCGCCGCGGCTTTCAGCTTACTGTCGCGAGGTGGCGTATATTACGCTTTTCTCTTTCAGAGTCAACCCTGAAGTTCAGGAtttttt < 2:341277/92‑1 (MQ=11) ttAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGAttttttt > 2:3067426/1‑100 (MQ=31) tAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTtc < 1:2731504/100‑1 (MQ=32) tAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTtc < 2:2208453/100‑1 (MQ=32) tAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTtc > 1:2594565/1‑100 (MQ=32) aaaGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTtct > 2:4057672/1‑100 (MQ=33) aaaGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTtct > 1:3110445/1‑100 (MQ=33) aaGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGCATTACCGGAttttttt > 2:3282137/1‑97 (MQ=255) aaGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTtctc > 1:675097/1‑100 (MQ=35) aaGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTCTTTtctc > 1:2677632/1‑100 (MQ=18) agagCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTctct > 2:2960174/1‑100 (MQ=35) gagCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCtt < 2:3462107/100‑1 (MQ=38) agCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTc < 2:483983/100‑1 (MQ=38) agCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTc < 2:1097425/100‑1 (MQ=38) aGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCgt < 2:3931895/99‑1 (MQ=40) aGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGC‑TTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCgttg < 2:3272269/100‑1 (MQ=255) gTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCgttn < 1:2754210/100‑2 (MQ=255) gTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCgttg > 2:965103/1‑100 (MQ=255) gTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCgttg > 2:750476/1‑100 (MQ=255) gTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCgttg > 1:3676403/1‑100 (MQ=255) gTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCgttg > 1:2864398/1‑100 (MQ=255) gTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCgttg > 1:3601895/1‑100 (MQ=255) ttGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCgttgt > 1:1408138/1‑100 (MQ=255) GCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCCCTTCGTTGTTc < 2:1355035‑M1/100‑1 (MQ=255) | CTCTTGAGACTTGGTATTCATTTTTCGTCTTGCGACGTTAAGAATCCGTATCTTCGAGTGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTC > NC_000913/3428812‑3429009 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |