New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3621939NA (NA)10 (0.070) 6/170 NT 100% coding (2748/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 3621967 0 (0.000)coding (2776/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor

GCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACAGAGAAAACC  >  NC_000913/3621865‑3622038
                                                                          |                                                                                                   
gCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGC                                                                            >  1:586909‑M2/1‑100 (MQ=255)
 cAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCC                                                                           <  1:160078‑M2/100‑1 (MQ=255)
 cAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCC                                                                           <  1:3791866‑M2/100‑1 (MQ=255)
  aGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCCG                                                                          >  2:3949769‑M2/1‑100 (MQ=255)
  aGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCCG                                                                          >  2:2043884‑M2/1‑100 (MQ=255)
  aGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCCG                                                                          >  1:863364‑M2/1‑100 (MQ=255)
  aGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCCG                                                                          <  1:638637‑M2/100‑1 (MQ=255)
  aGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCCG                                                                          >  1:55055‑M2/1‑100 (MQ=255)
  aGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCCG                                                                          >  1:3259358‑M2/1‑100 (MQ=255)
  aGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCCG                                                                          >  1:26225‑M2/1‑100 (MQ=255)
   gCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACAGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCCGG                                                                         <  1:3943016‑M2/100‑1 (MQ=255)
                                                                    gCTGCACCCGGACAGCGCCCTCAGCATGTGGCCGGgtgcagctccgggtcgggcaggcggttacctgccgggtctgtggtatccgggatgcggatatcc         <  1:4070504‑M2/99‑65 (MQ=255)
                                                                     cTGCACCCGGACAGCACCCTCAGCATGTGGCCGGgtgcagctccgggtcgggcaggcggttacctgccgggtctgtggcatacgggatgcggatatccag       <  1:3525871‑M2/100‑67 (MQ=255)
                                                                      tGCACCCGGACAGCACCCTAAGCATGTGGCCGGgtgcagctccgggtcgggcaggcggttacctgccgggtctgtggcatacgggatgcggatatccaga      <  1:996350‑M2/100‑68 (MQ=255)
                                                                       gCACCCGGACAGCACCCTCGGCATGTGGCCGGgtgcagctccgggtcgggcaggcggttacctgccgggtctgtggcatacgggatgcggatatccggat     <  1:143081‑M2/100‑69 (MQ=255)
                                                                        cACCCGGACAGCACCCTCAGCATGTGGCCGGgtgcagctccgggtcgggcaggcggttacctgccgggtctgtggcatacgggatgcggctatccagatt    <  1:3840826‑M2/100‑70 (MQ=255)
                                                                        cACCCGGACAGCACCCTCAGCATGTGGCCGGgtgcagctccgggtcgggcaggcggttacctgccgggtctgtggcatacgggatgcggatatccagatt    <  1:3972807‑M2/100‑70 (MQ=255)
                                                                         aCGCGGACAGCGCCCTCAGCATGTGGCCGGgtgcagcgccgagtcgggcaggcggttacctgccgggtctgtggtatacgggatgcggatatccagattc   <  2:2250931‑M2/100‑71 (MQ=255)
                                                                         aCCCGGACAGCACCCTCAGCATGTGGCCGGgtgcagctccgggtcgggcaggcggttacctgccgggtctgtggcatacgggatgcggatatccagattc   <  1:187448‑M2/100‑71 (MQ=255)
                                                                          cccGGACAGCACCCTCAGCATGTGGCCGGgtgcagctccgggtcgggcaggcggttacctgccgggtctgtggcatacgggatgcggatatccagattcg  <  2:3045576‑M2/100‑72 (MQ=255)
                                                                          cccGGACAGCACCCTCAGCATGTGGCCGGgtgcagctccgggtcgggcaggcggttacctgccgggtctgtggcatacgggatgcggatatccagattcg  <  2:3621841‑M2/100‑72 (MQ=255)
                                                                          |                                                                                                   
GCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACAGAGAAAACC  >  NC_000913/3621865‑3622038

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.