New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3622151NA (NA)6 (0.040) 3/168 NT 100% coding (2960/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 3622177 0 (0.000)coding (2986/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor

TGAGCGGACTCACCGGTACCATTACGACAGTCAGCACCGGCTGGTGCACTACACGCGGACACAATATGAAGAGCCGCTGGTCGAAAGTCGCTATCTTTACGACCCGCTGGGCCGCAGGGTGGCAAAACGGGTGTGGCGGCGTGAACGGGACCTGACGGGCTGGATGTCGCTGTCA  >  NC_000913/3622074‑3622248
                                                                             |                                                                                                 
tGAGCGGACTCACCGGTACCATTACGACAGTCAGCACCGGCTGGTGCACTACACGCGGACACAATATGAAGAGCCGCTGGTCGAAAGTCGCTATCTTTAC                                                                             <  1:297499‑M2/100‑1 (MQ=255)
tGAGCGGACTCACCGGTACCATTACGACAGTCAGCACCGGCTGGTGCACTACACGCGGACACAATATGAAGAGCCGCTGGTCGAAAGTCGCTATCTTTAC                                                                             >  1:3396779‑M2/1‑100 (MQ=255)
tGAGCGGACTCACCGGTACCATTACGACAGTCAGCACCGGCTGGTGCACTACACGCGGACACAATATGAAGAGCCGCTGGTCGAAAGTCGCTATCTTTAC                                                                             >  2:3019165‑M2/1‑100 (MQ=255)
tGAGCGGACTCACCGGTACCATTACGACAGTCAGCACCGGCTGGTGCACTACACGCGGACACAATATGAAGAGCCGCTGGTCGAAAGTCGCTATCTTTAC                                                                             <  2:3699529‑M2/100‑1 (MQ=255)
tGAGCGGACTCACCGGTACCATTACGACAGTCAGCACCGGCTGGTGCACTACACGCGGACACAATATGAAAAGCAGCTGGCCGAAAGTCACTATCTTTAC                                                                             <  2:1447093‑M2/100‑1 (MQ=255)
tGAGCGGACTCACCGGTACCATTACGACAGTCAGCACCGGCTGGTGCACTACACGCGGACACAATACGAAGAGCCGCAGGTCGAAGGTCGCTATCTTTAC                                                                             <  2:1311760‑M2/100‑1 (MQ=255)
tGAGCGGACTCACCGGTACCATGACGACAGTCAGCACCGGCTGGTGCACTACACGCGGACACAATATGAAGAGCCGCTGGTCGAAAGTCGCTAGCTTTAC                                                                             >  2:3472288‑M2/1‑100 (MQ=255)
 gAGCGGACTCACCGGTACCATTACGACAGTCAGCACCGGCTGGTGCACTACACGCGGACACAATATGAAGAGCCGCTGGTCGAAAGTCGCTATCTTTACG                                                                            >  2:1612829‑M2/1‑100 (MQ=255)
 gAGCGGACTCACCGCTACCATTACGACAGTCAGCACCGGCTGGTGCACTACACGCGGACACAATATGCAGAGCCGCTGGTCGAAAGTCGCTATCTTTAC                                                                             >  2:2004037‑M2/1‑99 (MQ=255)
                                                                  tGAAGAGCCGCTGGTCGAAAGTCGCTATCTTTACGACCagcggctcttcatattgtgtccgcgtgtagtgcaccagccggtgctgactgtcgtaatggta           <  2:3242717‑M2/100‑63 (MQ=255)
                                                                        gCCGCTGGTCGAAAGTCGCTATCTTTACGACCagcggctcttcatattgtgtccgcgtgtagtgcaccagccggtgctgactgtcgtaatggtaccggtg     <  1:299332‑M2/100‑69 (MQ=255)
                                                                        gCCGCTGGTCGAAAGTCGCTATCTTTACGACCagcggctcttcatattgtgtccgcgtgtagtgcaccagccggtgctgactgtcgtaatggtaccggtg     <  1:3718195‑M2/100‑69 (MQ=255)
                                                                          cGCTGGTCGAAAGTCGCTATCTTTACGACCagcggctcttcacattgtgtccgcgtgtagtgcaccagccggtcctgactgtcgtaatggtaccggtgag   <  2:1305234‑M2/100‑71 (MQ=255)
                                                                          cGCTGGTCGAAAGTCGCTATCTTTACGACCagcggctctgcatattgtgtccgcgtgtagtgcaccagccggtgctgactgtcgtaatggtaccggtggg   <  1:358756‑M2/100‑71 (MQ=255)
                                                                           gCTGGTCGAAAGTCGCTATCTTTACGACCagcggctctgcatattgtgtccgcgtgtagtgcaccagccggtgctgactgtcgtaatggtaccggtgggt  <  1:1647386‑M2/100‑72 (MQ=255)
                                                                             |                                                                                                 
TGAGCGGACTCACCGGTACCATTACGACAGTCAGCACCGGCTGGTGCACTACACGCGGACACAATATGAAGAGCCGCTGGTCGAAAGTCGCTATCTTTACGACCCGCTGGGCCGCAGGGTGGCAAAACGGGTGTGGCGGCGTGAACGGGACCTGACGGGCTGGATGTCGCTGTCA  >  NC_000913/3622074‑3622248

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.