New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3622151	NA (NA)	6 (0.040)	3/168	NT	100%	coding (2960/4236 nt)	rhsB	Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
	?	NC_000913	= 3622177	0 (0.000)					coding (2986/4236 nt)	rhsB	Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor

TGAAGAGCCGCTGGTCGAAAGTCGCTATCTTTACGACCCGCTGGGCCGCAGGGTGGCAAAACGGGTGTGGCGGCGTGAACGGGACCTGACGGGCTGGATGTCGCTGTCACGGAAACCGCAAGTGACCTGGTACGGCT  >  NC_000913/3622140‑3622276                                      |                                                                                                    tGAAGAGCCGCTGGTCGAAAGTCGCTATCTTTACGACCagcggctcttcatattgtgtccgcgtgtagtgcaccagccggtgctgactgtcgtaatggta                                       <  2:3242717‑M2/100‑63 (MQ=255)       gCCGCTGGTCGAAAGTCGCTATCTTTACGACCagcggctcttcatattgtgtccgcgtgtagtgcaccagccggtgctgactgtcgtaatggtaccggtg                                 <  1:3718195‑M2/100‑69 (MQ=255)       gCCGCTGGTCGAAAGTCGCTATCTTTACGACCagcggctcttcatattgtgtccgcgtgtagtgcaccagccggtgctgactgtcgtaatggtaccggtg                                 <  1:299332‑M2/100‑69 (MQ=255)         cGCTGGTCGAAAGTCGCTATCTTTACGACCagcggctcttcacattgtgtccgcgtgtagtgcaccagccggtcctgactgtcgtaatggtaccggtgag                               <  2:1305234‑M2/100‑71 (MQ=255)         cGCTGGTCGAAAGTCGCTATCTTTACGACCagcggctctgcatattgtgtccgcgtgtagtgcaccagccggtgctgactgtcgtaatggtaccggtggg                               <  1:358756‑M2/100‑71 (MQ=255)          gCTGGTCGAAAGTCGCTATCTTTACGACCagcggctctgcatattgtgtccgcgtgtagtgcaccagccggtgctgactgtcgtaatggtaccggtgggt                              <  1:1647386‑M2/100‑72 (MQ=255)                                  cGACCagcggctcttcatattgtgtccgcgtgtagtgcaccagccggtgctgactgtcgtaatggtaccggtgagtccgctcatcatccgtgcggataac      <  1:3663798‑M2/100‑96 (MQ=255)                                  cGACCagcggctcttcatattgtgtccgcgtgtagtgcaccagccggtgctgactgtcgtaatggtaccggtgagtccgctcatcatccgtgcggataac      >  1:2959612‑M2/1‑5 (MQ=255)                                  cGACCagcggctcttcatattgtgtccgcgtgtagtgcaccagccggtgctgactgtcgtaatggtaccggtgagtccgctcatcatccgtgcggataac      >  1:70788‑M2/1‑5 (MQ=255)                                  cGACCagcggctcttcatattgtgtccgcgtgtagtgcaccagccggtgctgactgtcgtaatggtaccggtgagtccgctcatcatccgtgcggataac      >  2:1504632‑M2/1‑5 (MQ=255)                                  cGACCagcggctcttcatattgtgtccgcgtgtagtgcaccagccggtgctgactgtcgtaatggtaccggggaggccgctcatcatccgtgcggataac      >  2:1065358‑M2/1‑5 (MQ=255)                                   gACCagcggctcttcatattgtgtccgcgtgtagtgcaccagccggtgctgactgtcgtaatggtaccggtgagtccgctcatcatccgtgcggataacc     <  1:3081627‑M2/100‑97 (MQ=255)                                   gACCagcggctcttcatattgtgtccgcgtgtagtgcaccagccggtgctgactgtcgtaatggtaccggtgagtccgctcatcatccgtgcggataacc     >  2:2918518‑M2/1‑4 (MQ=255)                                   gACCagcggctcttcatattgtgtccgcgtgtagtgcaccagccggtgctgactgtcgtaatggtaccggtgagtccgctcatcatccgtgcggataacc     <  2:1080100‑M2/100‑97 (MQ=255)                                   gACCagcggctcttcatattgtgtccgcgtgtagtgcaccagccggtgctgactgtcgtaatggtaccggtgagtccgctcatcatccgtgcggataacc     <  2:2558747‑M2/100‑97 (MQ=255)                                   gACCagcggctcttcatattgtgtccgcgtgtagtgcaccagccggtgctgactgtcgtaatggtaccggtgagtccgctcatcatccgtgcggataacc     >  2:1735759‑M2/1‑4 (MQ=255)                                   gACCagcggctcttcatattgtgtccgcgtgtagtgcaccagccggtgctgactgtcgtaatggtaccggtgagtccgctcatcatccgagcggataacc     <  2:2705016‑M2/100‑97 (MQ=255)                                    aCCagcggctcttcatattgtgtccgcgtgtagtgcaccagccggtgctgactgtcgtaatggtaccggtgagtccgctcatcatccgtgcggataaccc    >  2:4052026‑M2/1‑3 (MQ=255)                                    aCCagcggctcttcatattgtgtccgcgtgtagtgcaccagccggtgctgactgtcgtaatggtaccggtgagtccgctcatcatccgtgcggataaccc    <  2:1825515‑M2/100‑98 (MQ=255)                                    aCCagcggctcttcatattgtgtccgcgtgtagtgcaccagccggtgctgactgtcgtaatggtaccggtgagtccgctcatcatccgtgcggataaccc    >  2:1734798‑M2/1‑3 (MQ=255)                                    aCCagcggctcttcatattgtgtccgcgtgtagtgcaccagccggtgctgactgtcgtaatggtaccggtgagtccgctcatcatccgtgcggataaccc    >  2:1381173‑M2/1‑3 (MQ=255)                                    aCCagcggctcttcatattgtgtccgcgtgtagtgcaccagccggtgctgactgtcgtaatggtaccggtgagtccgctcatcatccgtgcggataaccc    <  1:98164‑M2/100‑98 (MQ=255)                                    aCCagcggctcttcatattgtgtccgcgtgtagtgcaccagccggcgctgactgtcgtaatggtaccggtgagtccgctcatcatccgtgcggataaccc    <  2:197054‑M2/100‑98 (MQ=255)                                    aCCagcggctcttcatattgtgtccgcgtgtagtgcaacagccggtgctgactgtcgtaatggtaccggtgagtccgctcatcatccgtgcggataaccc    >  2:2795254‑M2/1‑3 (MQ=255)                                     ccagcggctcttcatattgtgtccgcgtgtagtgcaccagccggtgctgactgtcgtaatggtaccggtgagtccgctcatcatccgtgcggataacccc   <  1:1483624‑M2/100‑99 (MQ=255)                                     ccagcggctcttcatattgtgtccgcgtgtagtgcaccagccggtgctgactgtcgtaatggtaccggtgagtccgctcatcatccgtgcggataacccc   >  1:3000462‑M2/1‑2 (MQ=255)                                      cagcggctcttcatattgtgtccgcgtgtagtgcaccagccggtgctgactgtcgtaatggtaccggtgagtccgctcatcatccgtgcggataacccct  <  2:143600‑M2/100‑100 (MQ=255)                                      cagcggctcttcatattgtgtccgcgtgtagtgcaccagccggtgctgactgtcgtaatggtaccggtgagtccgctcatcatccgtgcggataacccct  <  1:2210242‑M2/100‑100 (MQ=255)                                      |                                                                                                    TGAAGAGCCGCTGGTCGAAAGTCGCTATCTTTACGACCCGCTGGGCCGCAGGGTGGCAAAACGGGTGTGGCGGCGTGAACGGGACCTGACGGGCTGGATGTCGCTGTCACGGAAACCGCAAGTGACCTGGTACGGCT  >  NC_000913/3622140‑3622276

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.