New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 900799NA (NA)5 (0.040) 5/164 NT NA noncoding (51/87 nt) REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 900831 NA (NA)noncoding (83/87 nt) REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 177 total aligned reads displayed.

GACAACTTAGTGGGTTGTCCGTCTTCATTATAAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATGCCAGCGCTTTGC  >  NC_000913/900701‑900897
                                                                                                  |                                                                                                   
gACAACTTAGTGGGTTGTCCGTCTTCATTATAAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATg                                                                                                    >  1:2540008‑M1/1‑99 (MQ=255)
  cAACTTAGTGGGTTGTCCGTCTTCATTATAAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATgtc                                                                                                  <  1:1313433‑M1/100‑4 (MQ=255)
  cAACTTAGTGGGTTGTCCGTCTTCATTATAAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATgtc                                                                                                  <  1:1576584‑M1/100‑4 (MQ=255)
   aaCTTAGTGGGTTGTCCGTCTTCATTATAAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATgtct                                                                                                 <  1:1186570‑M1/100‑5 (MQ=255)
    aCTTAGTGGGTTGTCCGTCTTCATTATAAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATgtctg                                                                                                >  2:348969‑M1/1‑95 (MQ=255)
    aCTTAGTGGGTTGTCCGTCTTCATTATAAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATgtctg                                                                                                >  1:3932249‑M1/1‑95 (MQ=255)
         gTGGGTTGTCCGTCTTCATTATAAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCg                                                                                           >  2:114790/1‑100 (MQ=255)
         gTGGGTTGTCCGTCTTCATTATAAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCg                                                                                           <  2:812534/100‑1 (MQ=255)
         gTGGGTTGACTGACTTCATTATAAGAATTTAAGCACTATGTAGGGCGGATAAGGCGACACCGCCGCATCCGGCACAGTCACCGAGCTGATGTCTGacg                                                                                             <  2:227206/98‑3 (MQ=37)
            ggTTGTCCGTCTTCATTATAAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACg                                                                                        <  1:2681436/100‑1 (MQ=255)
             gTTGTCCGTCTTCATTATAAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGc                                                                                       >  1:2125379/1‑100 (MQ=255)
                gTCCGTCTTCATTATAAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTgg                                                                                    >  1:2831767/1‑100 (MQ=255)
                 tCCGTCTTCATTATAAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGgc                                                                                   >  1:1581398/1‑100 (MQ=255)
                  ccGTCTTCATTATAAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGgcg                                                                                  <  1:3727942/100‑1 (MQ=255)
                  ccGTCTTCATTATAAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGgcg                                                                                  <  2:3149900/100‑1 (MQ=255)
                   cGTCTTCATTATAAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGgcgc                                                                                 >  1:3132720/1‑100 (MQ=255)
                   cGTCTTCATTATAAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGgcg                                                                                  <  1:2023807/99‑1 (MQ=255)
                    gTCTTCATTATAAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGcgcg                                                                                <  2:3231699/100‑1 (MQ=255)
                    gTCTTCATTATAAGAATTGATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGcgcg                                                                                <  2:278364/100‑1 (MQ=255)
                     tCTTCATTATAAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGt                                                                               >  1:1891207/1‑100 (MQ=255)
                     tCTTCATTATAAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGt                                                                               >  1:2861996/1‑100 (MQ=255)
                       ttCATTATAAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCt                                                                             >  1:1257484/1‑100 (MQ=255)
                          aTTATAAGAATTTATGCACTCTGTAGGCCGGATAAGTCGTCCCCGCCGCATCCGGCACGGGCACCGTGCTGATGTCTGCTGCGACGCTGCCGCGTCt                                                                             >  2:623972/1‑97 (MQ=38)
                           ttATAAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATC                                                                         >  1:3098672‑M2/1‑100 (MQ=255)
                           ttATAAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATC                                                                         >  2:3736941‑M2/1‑100 (MQ=255)
                            tataTGAATTTATGCACTATGTAGGCCGTATAAGGACTCCCTGCCTTCTGCGGCATAATCATCTTGCTGATGTCGGATGCGACGCTGGCGCGTCTTATc                                                                         <  2:3353076/99‑1 (MQ=16)
                            tataAGCCTTTATGCACTAAGTAGCCCGGATAAGGCGGCCCCGCCGCATCCCGCACAGGCACCGTGCTGATCCCTGACGCGACCCTGGCGCCTCCTATCa                                                                        >  2:2002863/1‑100 (MQ=255)
                             ataAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAG                                                                       >  1:3609980‑M2/1‑100 (MQ=255)
                             ataAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAG                                                                       >  2:3125391‑M2/1‑100 (MQ=255)
                             ataAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAG                                                                       >  1:2236837‑M2/1‑100 (MQ=255)
                             ataAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAG                                                                       >  1:1977468‑M2/1‑100 (MQ=255)
                              taAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCCTCCGGCACAGGCAACGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCA                                                                        <  1:1223015‑M2/98‑1 (MQ=255)
                              taAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATgtctgataagacgcgccagcgtcgcatcaga                                                                      <  1:213716‑M1/100‑32 (MQ=255)
                              taAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGA                                                                      >  1:2122242‑M2/1‑100 (MQ=255)
                              taAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGA                                                                      <  2:296700‑M2/100‑1 (MQ=255)
                              naagAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGA                                                                      <  1:3124707‑M2/99‑1 (MQ=255)
                               aaGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGAC                                                                     <  2:2089161‑M2/100‑1 (MQ=255)
                                aGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGAGCGTCTTATCAGAC                                                                     <  1:4069749‑M2/99‑1 (MQ=255)
                                 gAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCt                                                                   <  2:3859531/100‑1 (MQ=255)
                                   aTTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTAc                                                                 >  1:2461939/1‑100 (MQ=255)
                                   aTTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTAc                                                                 <  2:307765/100‑1 (MQ=255)
                                    tttATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACa                                                                <  1:348972/100‑1 (MQ=255)
                                    tttATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACa                                                                <  1:820071/100‑1 (MQ=255)
                                    tttATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACa                                                                <  1:1549233/100‑1 (MQ=255)
                                      tctGCACTATCTAGGCCGGATATGCCGTCCCCTCCGCATCCGGCACCGGCACCGTGCTGATGTCTGATGCGACTCCGGCGCGTCTCATCAGACCTACa                                                                >  2:544294/3‑98 (MQ=255)
                                        tGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAAc                                                           >  1:571371/1‑100 (MQ=255)
                                        tGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAAc                                                           <  1:953228/100‑1 (MQ=255)
                                        tGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAAc                                                           <  2:1442248/100‑1 (MQ=255)
                                         gCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAAcc                                                          >  1:3161803/1‑100 (MQ=255)
                                         gCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAAcc                                                          <  1:1731696/100‑1 (MQ=255)
                                          cACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAAccc                                                         >  2:429732/1‑100 (MQ=255)
                                          cACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAAccc                                                         >  2:979475/1‑100 (MQ=255)
                                           aCTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAAcccc                                                        <  1:4090722/100‑1 (MQ=255)
                                           aCTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACAGCCCTGATGTCTGATGCGACACCGGCGCGTATCATCACACCTACACAAacc                                                         >  2:3262102/1‑99 (MQ=25)
                                            cTATGTAGGCCGGATAAGGCATCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAAccccc                                                       >  1:1157109/1‑100 (MQ=255)
                                              aTGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCg                                                     >  1:480527/1‑100 (MQ=255)
                                              aTGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCg                                                     >  1:3168956/1‑100 (MQ=255)
                                                 tAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCg                                                  <  1:423914/100‑1 (MQ=255)
                                                 tAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCg                                                  >  1:3888277/1‑100 (MQ=255)
                                                   ggCCGTATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGaa                                                >  2:1323550/1‑100 (MQ=255)
                                                   ggCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAACCCCCCCgg                                                    <  2:3504296/96‑1 (MQ=255)
                                                   ggCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGaa                                                >  1:1008406/1‑100 (MQ=255)
                                                    gCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAAt                                               >  1:1014911/1‑100 (MQ=255)
                                                     ccGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATg                                              <  1:3276347/100‑1 (MQ=255)
                                                       ggATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTa                                            >  2:673675/1‑100 (MQ=255)
                                                        gATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTAc                                           <  1:1920055/100‑1 (MQ=255)
                                                        gATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTAc                                           <  1:2413722/100‑1 (MQ=255)
                                                           aaGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCa                                        <  1:296703/100‑1 (MQ=255)
                                                            aGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAg                                       <  2:1749755/100‑1 (MQ=255)
                                                             ggCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGc                                      >  1:3725620/1‑100 (MQ=255)
                                                               cGTCCCCGCCGCCTCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGCCTTATCAGACCTACAAACCCCCCAGGCGAATGTACGCAGCca                                    >  2:851394/1‑100 (MQ=38)
                                                                 tCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCcaca                                  >  1:589536/1‑100 (MQ=255)
                                                                  ccccGCCGCATCCGGCACAGGCACCGTGCTGATATCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCCGGCGAATGTACGCAGCcaca                                  >  2:2731062/1‑100 (MQ=255)
                                                                   cccGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACAtt                                <  1:3674450/100‑1 (MQ=255)
                                                                   cccGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACAtt                                >  1:2736131/1‑100 (MQ=255)
                                                                   cccGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACAtt                                >  2:2102789/1‑100 (MQ=255)
                                                                   cccGCCGCATCCGGCACAGGCACCGTGCTAATGTCTCATCCGACGCTCGCGCGTCTTATCAGACCTCCAAAACCCCCCGGCGAATCTACGCCGCcac                                   >  2:3623478/1‑97 (MQ=37)
                                                                    ccgccgCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTa                               <  2:2922451/100‑1 (MQ=255)
                                                                     cgccgcATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCACGGCGAATGTACGCAGCCACATTaa                              >  2:1994522/1‑100 (MQ=255)
                                                                          cATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCg                         <  2:4013661/100‑1 (MQ=255)
                                                                             cctgCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTTCTCAGCCACATTAATTTCGCCg                      <  2:1366326/97‑1 (MQ=255)
                                                                               ggCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGtt                    >  1:2760603/1‑100 (MQ=255)
                                                                               ggCACAGGCACCGTGCTGATGTCTCATGCGACGCTTGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCg                         <  2:2690356/95‑1 (MQ=255)
                                                                                gCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTc                   <  1:1066727/100‑1 (MQ=255)
                                                                                  acaGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGa                 >  1:3042814/1‑100 (MQ=255)
                                                                                  acaGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGa                 >  2:273420/1‑100 (MQ=255)
                                                                                    aGGCAGCGTGCTGATGTCTGATGCGCCGCTGGCGGGTCTTATCAGACCTACAAGACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAAt               <  2:1667222/100‑1 (MQ=38)
                                                                                    aGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAAt               <  2:3459024/100‑1 (MQ=255)
                                                                                     ggCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATg              >  1:3498132/1‑100 (MQ=255)
                                                                                     ggCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATg              <  2:2199012/100‑1 (MQ=255)
                                                                                     ggCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATg              <  1:586101/100‑1 (MQ=255)
                                                                                       cACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATGcc            >  1:3208712/1‑100 (MQ=255)
                                                                                       cACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATGcc            >  2:2373997/1‑100 (MQ=255)
                                                                                           gTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATGCCAgcg        >  1:1664206/1‑100 (MQ=255)
                                                                                            tGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATGCCAgcgc       <  2:2518615/100‑1 (MQ=255)
                                                                                               tGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATGCCAGCGCttt    >  1:2585450/1‑100 (MQ=255)
                                                                                                gATGTCTGATGCGACGCTGGCGCGTCTTATCAGACatcagcacggtgcctgtgccggatgcggcggggacgccttatccggcctacatagtgcataaatt    <  1:627607‑M2/100‑66 (MQ=255)
                                                                                                gATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATGCCAGCGCTTTg   <  2:1190779/100‑1 (MQ=255)
                                                                                                 aTGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATGCCAGCGCTTTgc  <  2:357984/100‑1 (MQ=255)
                                                                                                  tGTCTGATGCGACGCTGGCGCGTCTTATCAGACatcagcacggtgcctgtgccggatgcggcggggacgccttatccggcctacatagtgcataaattct  <  1:447878‑M2/100‑68 (MQ=255)
                                                                                                  |                                                                                                   
GACAACTTAGTGGGTTGTCCGTCTTCATTATAAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCGAATGCCAGCGCTTTGC  >  NC_000913/900701‑900897

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.