New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 169158065 (1.210)5 (0.130)
+TCAGATTGTTGACAAAGTGCGCGTTTTTTA		 4/138 6.2 10.0% intergenic (+220/+6) ydgA/uidC DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein
?NC_000913 2001967 = NA (NA)intergenic (‑178/+143) fliA/fliC RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein (flagellin)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below cutoff threshold.

GAAACGCCGGAGATTTTTCTCTCCGGCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1691551‑1691580
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCA  >  NC_000913/2001967‑2002012
                              ||||||||||||||||||||||||||||||                                              
GAAACGCCGGAGATTTTTCTCTCCGGCGTTTCAGATTGTTGACAAAGTGCGCGTTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCAGCCTACAAAAA        >  1:260785/1‑100
  AACGCCGGAGATTTTTCTCTCCGGCGTTTCAGATTGTTGACAAAGTGCGCGTTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCAGCCTACAAAAAct      >  1:987484/1‑98
    CGCCGGAGATTTTTCTCTCCGGCGTTTCAGATTGTTGACAAAGTGCGCGTTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCAGCCTACAAAAActca    >  2:785154/1‑96
     GCCGGAGATTTTTCTCTCCGGCGTCTCAGATTGTTGACAAAGTGCGCGTTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCAGCCTACAAAAActc     >  2:1045770/1‑95
      nCGGAGATTTTTCTCTCCGGCGTTTCAGATTGTTGACAAAGTGCGCGTTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCAGCCTACAAAAActcata  >  1:918582/2‑94
                              ||||||||||||||||||||||||||||||                                              
GAAACGCCGGAGATTTTTCTCTCCGGCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1691551‑1691580
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCA  >  NC_000913/2001967‑2002012

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.