New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1691580	65 (1.210)	5 (0.130) +TCAGATTGTTGACAAAGTGCGCGTTTTTTA	4/138	6.2	10.0%	intergenic (+220/+6)	ydgA/uidC	DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein
	?	NC_000913	2001967 =	NA (NA)					intergenic (‑178/+143)	fliA/fliC	RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein (flagellin)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below cutoff threshold.

AGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAACGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGCGATCGCCCAGCGTACTGCCATCGCGCTTTTCCCGCCC  >  NC_000913/1691481‑1691678                                                                                                    |                                                                                                   aGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAACGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGtt                                                                                                    >  1:747553/1‑100 (MQ=255)     tttGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAACGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTAttt                                                                                                >  1:21693/1‑100 (MQ=255)     tttGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAACGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTAttt                                                                                                <  1:1127539/100‑1 (MQ=255)       tGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAACGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTAttttt                                                                                              >  2:190257/1‑100 (MQ=255)          aGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAACGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTAc                                                                                           <  1:234431/100‑1 (MQ=255)             ccgatctaGGCGTTTACGCCGCATCCGGCATAAAAAACGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTc                                                                                        <  2:387280/93‑1 (MQ=255)              tGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAACGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCa                                                                                       <  2:451027/100‑1 (MQ=255)                 aTAAGGCGTTTACGCCGCATCCGGCATAAAAAACGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCa                                                                                    <  2:629585/100‑1 (MQ=255)                  tAAGGCGTTTACGCCGCATCCGGCATAAAAAACGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCa                                                                                    <  2:944992/99‑1 (MQ=255)                    aGGCGTTTACGCCGCATCCGGCATAAAAAACGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATaa                                                                                 >  1:952574/1‑100 (MQ=255)                    aGGCGTTTACGCCGCATCCGGCATAAAAAACGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATaa                                                                                 >  2:689668/1‑100 (MQ=255)                    aGGCGTTTACGCCGCATCCGGCATAAAAAACGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTATCTCCGGCGTTATTTTTTACTTCAgatcgg                                                                                 >  1:387284/1‑95 (MQ=255)                     ggCGTTTACGCCGCATCCGGCATAAAAAACGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATaaa                                                                                >  1:400224/1‑100 (MQ=255)                      gCGTTTACGCCGCATCCGGCATAAAAAACGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAg                                                                               <  1:246934/100‑1 (MQ=255)                        gTTTACGCCGCATCCGGCATAAAAAACGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTc                                                                             <  1:1251052/100‑1 (MQ=255)                          ttACGCCGCATCCGGCATAAAAAACGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTc                                                                             <  2:794591/98‑1 (MQ=255)                          ttACGCCGCATCCGGCATAAAAAACGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCAt                                                                           <  2:1248792/100‑1 (MQ=255)                            aCGCCGCATCCGGCATAAAAAACGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATAc                                                                         <  1:1036533/100‑1 (MQ=255)                             cgccgcATCCGGCATAAAAAACGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTCTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACt                                                                        >  2:175211/1‑100 (MQ=255)                              gccgcATCCGGCATAAAAAACGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTg                                                                       >  2:1196746/1‑100 (MQ=255)                              gccgcATCCGGCATAAAAAACGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTg                                                                       >  1:957382/1‑100 (MQ=255)                                     ccGGCATAAAAAACGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTc                                                                <  2:1024255/100‑1 (MQ=255)                                       ggCATAAAAAACGCGCACTTTGTCAACAATCTGCAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTAGTTCAGCATAAAGTCATACTGAATACTCAt                                                              >  2:781687/1‑100 (MQ=255)                                            aaaaaaCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTca                                                         <  2:1083820/100‑1 (MQ=255)                                            aaaaaaCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTca                                                         >  2:837203/1‑100 (MQ=255)                                                    cgcACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCan                                                 <  2:528254/100‑2 (MQ=255)                                                    cgcACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAg                                                 >  1:693656/1‑100 (MQ=255)                                                    cgcACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAg                                                 <  1:460406/100‑1 (MQ=255)                                                     gcACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGt                                                <  1:968908/100‑1 (MQ=255)                                                            gtcgagaagcTGGAACGCCGGAGATGTTTGTCGCCGGCGTTATTTTTTACTTCAGCATAGAGGCATACTGAATACTCATTTTCTCATCCCAGTAATTCAg                                         >  2:760861/10‑100 (MQ=255)                                                            gTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAg                                         <  1:1179597/100‑1 (MQ=255)                                                            gTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAg                                         <  2:1108098/100‑1 (MQ=255)                                                            gTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAg                                         <  1:1113819/100‑1 (MQ=255)                                                              caacaaTCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGc                                       >  1:1293114/1‑100 (MQ=255)                                                               aacaaTCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGCg                                      >  2:787428/1‑100 (MQ=255)                                                               aacaaTCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGCg                                      <  1:440858/100‑1 (MQ=255)                                                                acaaTCTGAAACGCCGGAGATTTTTTTTTTTTTTTTTATTTTTTACTTCAGCATAAAGTTATATTGTTTATTCTTTTTCACATCCCTGTAAtt                                            >  2:413785/1‑93 (MQ=255)                                                                 caaTCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGCGAt                                    >  2:743730/1‑100 (MQ=255)                                                                     cTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGCGATCGcc                                <  2:380264/100‑1 (MQ=255)                                                                        aaaCGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCATTAATTCAGGCGATCGCCCAg                             <  2:797048/100‑1 (MQ=255)                                                                              cGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGCGATCGCCCAGCGTACt                       <  2:67747/100‑1 (MQ=255)                                                                              cGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGCGATCGCCCAGCGTACt                       >  1:1043420/1‑100 (MQ=255)                                                                               ggAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGCGATCGCCCAGCGTACTg                      <  1:520568/100‑1 (MQ=255)                                                                                gagaTTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGCGATCGCCCAGCGTACTGc                     <  2:400220/100‑1 (MQ=255)                                                                                gagaTTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGCGATCGCCCAGCGTACTGc                     <  1:563116/100‑1 (MQ=255)                                                                                 agaTTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGCGATCGCCCAGCGTACTGcc                    <  2:1030079/100‑1 (MQ=255)                                                                                  gaTTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGCGATCGCCCAGCGTACTGCCa                   >  2:1278828/1‑100 (MQ=255)                                                                                  gaTTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGCGATCGCCCAGCGTACTGCCa                   >  1:1249614/1‑100 (MQ=255)                                                                                   aTTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGCGATCGCCCAGCGTACTGCCAt                  <  2:792633/100‑1 (MQ=255)                                                                                    tttttCTCTCTGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGCGATCGCTCAGCGTACTGTCATc                 >  2:1182904/1‑100 (MQ=255)                                                                                    tttttCTCTCCGGCGTTATTTTTTACTTCAGCATAAACTCATACTCAATACTCATTTTCACCTCCCAGTAATTCAGGCGATCGCCCAGCGTACTGc                     <  2:1205520/96‑1 (MQ=255)                                                                                     ttttCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGCGATCGCCCAGCGTACTGCCATcg                <  2:508502/100‑1 (MQ=255)                                                                                     ttttCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGCGATCGCCCAGCGTACTGCCATcg                >  1:45991/1‑100 (MQ=255)                                                                                      tttCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGCGATCGCCCAGCGTACTGCCATcgc               <  2:1043410/100‑1 (MQ=255)                                                                                         ctctcCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGCGATCGCCCAGCGTACTGCCATCGCGCt            >  2:118473/1‑100 (MQ=255)                                                                                          tctcCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGCGATCGCCCAGCGTACTGCCATCGCGCtt           <  2:1165291/100‑1 (MQ=255)                                                                                            tcCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGCGATCGCCCAGCGTACTGCCATCGCGCtttt         >  1:206226/1‑100 (MQ=255)                                                                                             ccGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGCGATCGCCCAGCGTACTGCCATCGCGCTTTTc        >  2:506973/1‑100 (MQ=255)                                                                                              cGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGCGATCGCCCAGCGTACTGCCATCGCGCTTTTcc       >  2:581841/1‑100 (MQ=255)                                                                                              cGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGCGATCGCCCAGCGTACTGCCATCGCGCTTTTcc       <  1:581845/100‑1 (MQ=255)                                                                                              cGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGCGATCGCCCAGCGTACTGCCATCGCGCTTTTcc       <  2:872036/100‑1 (MQ=255)                                                                                               ggCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGCGATCGCCCAGCGTACTGCCATCGCGCtttt         >  2:558247/1‑97 (MQ=255)                                                                                               ggCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGCGATCGCCCAGCGTACTGCCATCGCGCTTTTccc      <  2:598509/100‑1 (MQ=255)                                                                                               ggCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGCGATCGCCCAGCGTACTGCCATCGCGCTTTTccc      <  2:1089976/100‑1 (MQ=255)                                                                                                  gTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGCGATCGCCCAGCGTACTGCCATCGCGCTTTTCCCGcc   <  1:787433/100‑1 (MQ=255)                                                                                                   ttATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGCGATCGCCCAGCGTACTGCCATCGCGCTTTTCCCGccc  >  2:1155293/1‑100 (MQ=255)                                                                                                    |                                                                                                   AGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAACGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGCGATCGCCCAGCGTACTGCCATCGCGCTTTTCCCGCCC  >  NC_000913/1691481‑1691678

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.