New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1097029 =232 (0.560)34 (0.080)
+C
12/324 15.1 14.3% intergenic (+200/+536) ycdU/serX putative inner membrane protein/tRNA‑Ser
?NC_000913 = 1097570 179 (0.430)noncoding (83/88 nt) serX tRNA‑Ser
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below cutoff threshold.

GACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1097089‑1097029
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTC  <  NC_000913/1097570‑1097403
                                                             |                                                                                                                                                                        
gcccgaaAACGAAGTGGGCGGGCTGCCCGGAGGGCGGGCGAAGCGATTCAACCCCCCCCTCCCCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTG                                                                                                                  <  1:3193869/111‑1
 acagaGAACGCGGTGGGCGGGCCCCCCGAGGGGGGAGCGAGGCGAGTCAACCCCCCCCTCCCCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGAC                                                    <  2:4181280/174‑1
         cgcgggggGCGGGCGCCCCGCAGGGCGAGCGAAGCGATTCACCCCCCCCCCCCCCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGG                                                                                                     <  2:1753331/114‑1
           cgGTGGGCGGTCTCCCCGCGGGGCGAGCGAAGCGGTTCACCCCCCCCCTCCCCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAG                                                                                            <  1:3059263/127‑1
               ggggGGGCTCCCCGGAGGGCGGGGGAAGCGAGTCACCCCCCCCCTCCCCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACC                                                                                                          <  2:2265824/107‑1
                        cCCCGCGGGGCGGGCAAAGCGATTCAACCCCCCCCCCCCCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAG                                                  <  1:3265150/157‑1
                        cCCCGCGGGGCGAGGGAAGCGGTTCAACCCCCCCCTCCCCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGA                                                                                                   <  1:4760479/108‑1
                         CCCGCGGGGCGAGCGAAGCGATTCACCCCCCCCCTCCCCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGC                                                                                                                 <  2:2345145/94‑1
                               gggggggagagGCGAGCCACCCCCCCCCTCCCCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCC                                                            <  2:1336077/130‑1
                               GGGGGAGCGAGGCGATTCAACCCCCCCCCCCCCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTGTATTGCACACACCGGG                                                                                                       <  2:2976147/98‑1
                                  gtgtgggggttccaacccCCCCCCCTCCCCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCG      <  2:3780125/174‑1
                                  gggggGAAGGGACTCAACCCCCCCCCCCCCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGAC                                                    <  2:4696485/141‑1
                                   ttcgggggtgttcaaccCCCCCCCTCCCCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTG                          <  1:3742216/154‑1
                                   gtatggggggttccaccCCCCCCCTCCCCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGG                  <  1:985701/162‑1
                                    cGCGAAGCGACCCACCCCCCCCCCCCCCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAACGCAGTGAGCG                               <  1:1932053/164‑1
                                    AGCGAAGCGAGTAACCCCCCCCCTCCCCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGG                                                                                                     <  2:5228756/95‑1
                                    AGCAAAGCGATTCATCCCCCCCCTCCCCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTGTAT                                                                                                                    <  1:2214516/80‑1
                                      agagGCGAGTCACTCCCCCCCCACCCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTC  <  1:5505764/188‑1
                                       gagGCGATTCACCCCCCCCCTCCCCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGtg                                                                                                     <  1:3453611/89‑3
                                        AAGCAAGTCACCCCCCCCCTCCCCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACAC                                                                                                             <  2:113328/83‑1
                                           gttccaaccCCCCCCCTCCCCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGA                                                                                                   <  2:1133850/81‑1
                                            tttcgaccCCCCCCCTCTCCGCCATATTTAAAGAAGAGCTCGTGCGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGG                                                                                                     <  1:4243134/79‑1
                                            gagacaccCCCCCCCTCGCCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAA                                          <  1:4490328/138‑1
                                            gacccaccCCCCCCCTCCCCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGAC                                                    <  1:4560839/128‑1
                                             atccaccCCCCCCCTCCCCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCC                                                                                         <  1:850348/91‑1
                                             agcCAACCCCCCCCCCCCCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACC                                                                                                          <  2:5831508/78‑1
                                             acccaccCCCCCCCTCCCCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACC                                                                                                          <  2:129650/74‑1
                                             aataaccCCCCCCCCCCCCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGG                                                                                                     <  2:1308056/79‑1
                                                 accCCCCCCCTCGCCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAG                                                  <  2:3440616/130‑1
                                                 accCCCCCCCTCCCCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGAC                                                    <  2:4004303/128‑1
                                                  ccCCCCCCCTCCCCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTGTATTGCACACACCGGGGG                                                                                                     <  2:2683215/79‑1
                                                  ccCCCCCCCTCCCCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACAC                                                                                                           <  1:4889034/73‑1
                                                  ccCCCCCCCCCCCCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACC                                                                                                          <  2:1544374/74‑1
                                                      CCCCCCCCCCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCG                      <  2:3180422/156‑1
                                                             |                                                                                                                                                                        
GACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1097089‑1097029
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTC  <  NC_000913/1097570‑1097403

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.