| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3650712 = | NA (NA) | 8 (0.060) | 7/164 | NT | NA | noncoding (1/100 nt) | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 3650744 = | NA (NA) | noncoding (33/100 nt) | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
AAAATCGCCTGATGCGCTACGCCTGTCAGGCCTACAAATAACATACTATTCATCGAATTTTCATAACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3650817‑3650712‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgacCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCG > NC_000913/3650744‑3650841 AAAATCGCCTGATGCGCTACGCCTGTCGGGCCTACAAATAACATACTATTCATCGAATTTTCATAACTTTTTAGGTCGGATAAGACGCGCCAGCGCCGCA > 2:1028991/1‑100AAAATCGCCTGATGCGCTACGCCTGTCAGGCCTACAAATAACATACTATTCATCGAATTTTCATAACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCA < 1:1497602/100‑1AAAATCGCCTGATGCGCTACGCCTGTCAGGCCTACAAATAACATACTATTCATCGAATTTTCATAACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCA < 2:3778579/100‑1AAAATCGCCTGATGCGCTACGCCTGTCAGGCCTACAAATAACATACTATTCATCGAATTCTCATAACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCA > 1:1810539/1‑100 AAATCGCCTGATGCGCTACGCCTGTCAGGCCTACAAATAACATACTATTCATCGAATTTTCATAACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCAT > 1:463676/1‑100 TCGCCTGATGCGCTACGCCTGTCAGGCCTACAAATAACATACTATTCATCGACTTTTCATAACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCG > 1:3600991/1‑100 TCGCCTGATGCGCTACGCCTGTCAGGCCTACAAATAACATACTATTCATCGAATTTTCATAACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCG > 1:1852416/1‑100 CGCCTGATGCGCTACGCCTGTCAGGCCTACAAATAACATACTATTCATCGAATTTTCATAACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGA < 2:2798349/100‑1 GCCTGATGCGCTACGCCTGTCAGGCCTACAAATAACATACTATTCATCGAATTTTCATAACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGAC < 2:2776941/100‑1 GCCTGATGCGCTACGCCTGTCAGGCCTACAAATAACATACTATTCATCGAATTTTCATAACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGAC > 2:1947196/1‑100 GCCTGATGCGCTACGCCTGTCAGGCCTACAAATAACATACTATTCATCGAATTTTCATAACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGAC > 2:616873/1‑100 GCCTGATGCGCTACGCCTGTCAGGCCTACAAATAACATACTATTCATCGAATTTTCATAACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGAC < 2:3353600/100‑1 GCCTGATGCGCTACGCCTGTCAGGCCTACAAATAACATACTATTCATCGAATTTTCATAACTTTGTAAGTCGGATAAGACGCGCCAGCGTCGCATCCGAC > 1:2223852/1‑100 GCCTGATGCGCTACGCCTGTCAGGCCTACAAATAACATACTATTCATCGAATTTTCATAAATTTGTAGTTCGGATAAGACGCGCCAGCGTCGCATACGAC > 1:473224/1‑100 TTCATAACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGG > 1:2470396/1‑100 TTTGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACATACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGC > 2:2830068/1‑100 TAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACCTACAAAGTTATGAAAATTCGATGCATAGTATGTTATTTGTAGGCCTGACACGCGTAGCGCATCA > 1:1184099/1‑100 TAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACATACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCA > 2:89033/1‑100 GGTCGGATAAGACGCGCCAGCGTCGCATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGG > 2:1371847/1‑100 GGATAAGACGCGCCAGCGTCGCATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGAAGGCCTGACAGGCGTAGCGCATCAGGCGAT > 1:3251673/1‑100 GATAAGACGCGCCAGCGTCGCATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATT > 1:619913/1‑100 AGACGCGCCAGCGTCTCATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGC > 1:828064/1‑100 ATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCC > 1:1238259/1‑100 TCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCC < 2:1592826/100‑1 TCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCC > 2:417558/1‑100 CCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCT > 2:1162005/1‑100 CCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCT < 2:750978/100‑1 CGACGTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTG > 1:594537/1‑100 ACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCG < 2:2815087/100‑1 ACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCG < 1:541560/100‑1 ACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCG < 1:3625818/100‑1 AAAATCGCCTGATGCGCTACGCCTGTCAGGCCTACAAATAACATACTATTCATCGAATTTTCATAACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3650817‑3650712‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgacCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCG > NC_000913/3650744‑3650841 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |