BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3650712 =	NA (NA)	8 (0.060)	7/164	NT	NA	noncoding (1/100 nt)	RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
*	?	NC_000913	3650744 =	NA (NA)	8 (0.060)	7/164	NT	NA	noncoding (33/100 nt)	RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

Only 100 of 169 total aligned reads displayed.

GGTAAGCGCCTGAAATAAAGCGGCGATATCCCCCCCACAGGTTGTTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTG  >  NC_000913/3650645‑3650843

ggTAAGAGCCTGAAATAAAGCGGCGATATCCCCCCCACAGGTTGTTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGAcc                                                                                                     <  1:915761/100‑1 (MQ=255)

 gTAAGCGCCTGAAATAAAGCGGCGATATCCCCCCCACAGGTTGTTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCt                                                                                                    >  1:3664740/1‑100 (MQ=255)

  tgatgcgctacgcctgtcaggcctacaaataacatactattcatcgaattttcataactttgtatGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTa                                                                                                   >  2:89033‑M1/66‑100 (MQ=255)

   aaGCGCCTGAAATAAAGCGGCGATATCCCCCCCACAGGTTGTTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTAc                                                                                                  <  2:1945762/100‑1 (MQ=255)

    aGCGCCTGAAATAAAGCGGCGATATCCCCCCCACAGGTTGTTAGAAAAGTGCGCTTTATTTATTTCGGATGCGACGCTGGCGCGTCTTATCCAACCTACa                                                                                                 >  2:815087/1‑100 (MQ=255)

      gcgctacgcctgtcaggcctacaaataacatactattcatcgaattttcataactttgtatGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACaaa                                                                                               >  2:2830068‑M1/62‑100 (MQ=255)

       ggcTGAAATAAAGCGGCGATATCCCCCCCAGAGGTTGTTAGAAAAGTGCGCTGTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAg                                                                                              <  1:3129553/98‑1 (MQ=255)

       gcCTGAAATAAAGCGGCGATATCCCCCCCACAGGTTGTTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAg                                                                                              <  2:1340747/100‑1 (MQ=255)

       gcCTGAAATAAAGCGGCGATATCCCCCCCACAGGTTGTTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAg                                                                                              <  1:954048/100‑1 (MQ=255)

        ccTGAAATAAAGCGGCGATATCCCCCCCACAGGTTGTTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGt                                                                                             <  1:1975614/100‑1 (MQ=255)

          tGAAATAAAGCGGCGATATCCCCCCCACAGGTTGTTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTa                                                                                           >  1:750973/1‑100 (MQ=255)

           gAAATAAAGCGGCGATATCCCCCCCACAGGTTGTTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTAt                                                                                          <  1:2785611/100‑1 (MQ=255)

            naaTAAAGCGGCGATATCCCCCCCACAGGTTGTAAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTAGCGCGTCTTATCCGACCTACAAAGTTATg                                                                                         >  1:2280571/2‑100 (MQ=255)

             aaTAAAGCGGCGATATCCCCCCCACAGGTTGTTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGa                                                                                        >  2:519297/1‑100 (MQ=255)

              cctgtcaggcctacaaataacatactattcatcgaattttcataactttgtagGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGaa                                                                                       >  1:2470396‑M1/54‑100 (MQ=255)

              aTAAAGCGGCGATATCCCCCCCACAGGTTGTTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGCCCTACAAAGTTATGaa                                                                                       >  1:2215188/1‑100 (MQ=255)

              aTAAAGCGGCGATATCCCCCCCACAGGTTGTTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGaa                                                                                       >  2:75918/1‑100 (MQ=255)

               tAAAGCGGCGATATCCCCCCCACAGGTTGTTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGaaa                                                                                      >  1:2645743/1‑100 (MQ=255)

                  aGCGGCGATATCCCCCCCACAGGTTGTTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAAtt                                                                                   >  1:2478995/1‑100 (MQ=255)

                      gcgcTACCCCCCCCACAGGTTGTTATAAAAGTGCGCTTTATTGAAGTCCGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTACGAAAATTCg                                                                                 <  1:1846813/98‑1 (MQ=25)

                      gcgATATCCCCCCCACAGGTTGTTAGAAACGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGAt                                                                               <  1:2285278/100‑1 (MQ=255)

                      gcgATATCCCCCCCACAGGTTGTTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGAt                                                                               <  1:2467226/100‑1 (MQ=255)

                       cgATATCCCCCCCACAGGTTGTTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATg                                                                              >  2:566103/1‑100 (MQ=255)

                        gATATCCCCCCCACAGGTTGTTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGa                                                                             >  2:2954472/1‑100 (MQ=255)

                          tatCCCCCCCACAGGTTGTTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAAt                                                                           <  2:3028979/100‑1 (MQ=255)

                           atCCCCCCCACAGGTTGTTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATa                                                                          >  2:3491924/1‑100 (MQ=255)

                            tCCCCCCCACAGGTTGTTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAg                                                                         <  2:1114365/100‑1 (MQ=255)

                            tCCCCCCCACAGGTTGTTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAg                                                                         <  2:1958262/100‑1 (MQ=255)

                              ccccccACAGGTTGTTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTa                                                                       >  2:1452260/1‑100 (MQ=255)

                               cccccACAGGTTGTTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTAt                                                                      >  1:524502/1‑100 (MQ=255)

                               cccccACAGGTTGTTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTAt                                                                      >  2:2280619/1‑100 (MQ=255)

                                 cccACAGGTTGTTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGt                                                                    <  2:1514217/100‑1 (MQ=255)

                                     caGGTTGTTAGAAAAGTGCGCTTTATCTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTAtt                                                                <  1:1920705/100‑1 (MQ=255)

                                      aGGTTGTTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTAttt                                                               <  1:2022075/100‑1 (MQ=255)

                                        gttgttAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGt                                                             >  1:1378010/1‑100 (MQ=255)

                                          tgttAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAg                                                           <  2:1225528/100‑1 (MQ=255)

                                           gttAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAgg                                                          <  2:2539471/100‑1 (MQ=255)

                                            ttAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAgg                                                          >  1:2585793/1‑99 (MQ=255)

                                            ttAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGc                                                         >  2:1251729/1‑100 (MQ=255)

                                             tAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGGCCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGcc                                                        >  2:2878501/1‑100 (MQ=255)

                                             tAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGcc                                                        >  2:2127696/1‑100 (MQ=255)

                                             tAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGcc                                                        >  1:2886417/1‑100 (MQ=255)

                                              aGAAAAGTGCGCTTTATTTATGTCGGATGCGATGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCt                                                       <  1:3134083/100‑1 (MQ=255)

                                              aGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCt                                                       >  2:3640986/1‑100 (MQ=255)

                                               naaaaGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTg                                                      >  2:2922061/2‑100 (MQ=255)

                                                 aaaGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGAc                                                    <  1:1203820/100‑1 (MQ=255)

                                                 aaaGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGAc                                                    <  1:3777394/100‑1 (MQ=255)

                                                 aaaGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGAc                                                    >  2:1187906/1‑100 (MQ=255)

                                                  aaGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACa                                                   <  1:1114017/100‑1 (MQ=255)

                                                    gTGCGCTTTATTTATGTCGGATGCGTCGCTTGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATATTATGTTATTTGTAGGCCTGACAgg                                                 <  1:2734846/100‑1 (MQ=255)

                                                     tGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGc                                                <  2:378572/100‑1 (MQ=255)

                                                     tGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGc                                                <  2:697189/100‑1 (MQ=255)

                                                      gcgcTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCg                                               >  1:1016608/1‑100 (MQ=255)

                                                         cTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAg                                            <  2:1400578/100‑1 (MQ=255)

                                                         cTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAg                                            >  2:700854/1‑100 (MQ=255)

                                                          tttatttaTGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAgc                                           >  2:2007348/1‑100 (MQ=255)

                                                           ttatttatGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAgcg                                          <  2:2270597/100‑1 (MQ=255)

                                                             atttatGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCa                                        <  2:1090754/100‑1 (MQ=255)

                                                              tttatGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCAt                                       >  1:300384/1‑100 (MQ=255)

                                                                taggtcggataagacgcgccagcgtcgcatccgacCTACAAAGTTATGAAAATTCGATGCATAGTATGTTATTTGTAGGCCTGACACGCGTAGCGCATCa                                     >  1:1184099‑M2/36‑100 (MQ=255)

                                                                 atGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAg                                    <  1:3324111/100‑1 (MQ=255)

                                                                 atGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAg                                    >  2:3245560/1‑100 (MQ=255)

                                                                 atGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAg                                    >  2:270549/1‑100 (MQ=255)

                                                                  ggtcggataagacgcgccagcgtcgcatccgacCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAgg                                   >  2:1371847‑M2/34‑100 (MQ=255)

                                                                   GTCGTATGCGACGCTGGCGCGTCTTATCCGAACTACAAATTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGc                                  >  1:473224‑M1/1‑100 (MQ=255)

                                                                   GTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGc                                  >  2:616873‑M1/1‑100 (MQ=255)

                                                                   GTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGc                                  <  2:2776941‑M1/100‑1 (MQ=255)

                                                                     CGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAAGTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGa                                >  1:3600991‑M1/1‑100 (MQ=255)

                                                                       gataagacgcgccagcgtcgcatccgacCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGAtt                              >  1:619913‑M2/29‑100 (MQ=255)

                                                                         TGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAGAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGAtttt                            >  1:1810539‑M1/1‑100 (MQ=255)

                                                                         TGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGAtttt                            <  2:3778579‑M1/100‑1 (MQ=255)

                                                                         TGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGAtttt                            <  1:1497602‑M1/100‑1 (MQ=255)

                                                                          gCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTg                           <  2:242110/100‑1 (MQ=255)

                                                                           cGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGc                          >  1:325496/1‑100 (MQ=255)

                                                                           cGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGc                          <  1:2803381/100‑1 (MQ=255)

                                                                           cGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGc                          >  1:2043897/1‑100 (MQ=255)

                                                                           cGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGc                          >  2:3341909/1‑100 (MQ=255)

                                                                           agacgcgccagcgtctcatccgacCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGc                          >  1:828064‑M2/25‑100 (MQ=255)

                                                                            gACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGc                          <  1:3335545/99‑1 (MQ=255)

                                                                            gACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCt                         >  1:2370843/1‑100 (MQ=255)

                                                                             aCGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTa                        <  2:262124/100‑1 (MQ=255)

                                                                              cGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTAt                       >  1:3449839/1‑100 (MQ=255)

                                                                              cGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTAt                       >  1:1050530/1‑100 (MQ=255)

                                                                                cTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTAttt                     >  2:3790597/1‑100 (MQ=255)

                                                                                cTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTAttt                     <  2:3438016/100‑1 (MQ=255)

                                                                                  ggCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTac                   <  2:1020347/100‑1 (MQ=255)

                                                                                    cgcgTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTacac                 >  2:1619133/1‑100 (MQ=255)

                                                                                    cgcgTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTacac                 >  2:736214/1‑100 (MQ=255)

                                                                                      cgTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAg               <  1:370608/100‑1 (MQ=255)

                                                                                       gTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGt              >  2:987310/1‑100 (MQ=255)

                                                                                       gTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAAATGTATGTTATTTGTTGTTCAGACAGGCGTGGCGCATCAGGCGATTTTGCTATTTACGCAGt              >  1:719493/1‑100 (MQ=255)

                                                                                           tATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACt           >  1:1796192/1‑99 (MQ=255)

                                                                                           tATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTc          >  2:1620000/1‑100 (MQ=255)

                                                                                            atccgacCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTcc         >  1:1238259‑M2/8‑100 (MQ=255)

                                                                                               cgacGTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTg      >  1:594537‑M2/5‑100 (MQ=255)

                                                                                                 acCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCg    <  2:2815087‑M2/98‑1 (MQ=255)

                                                                                                 acCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCg    <  1:3625818‑M2/98‑1 (MQ=255)

                                                                                                   cTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTg  <  2:3724694/100‑1 (MQ=255)

                                                                                                   cTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTg  <  2:437874/100‑1 (MQ=255)

                                                                                                   cTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTg  <  1:3565451/100‑1 (MQ=255)

GGTAAGCGCCTGAAATAAAGCGGCGATATCCCCCCCACAGGTTGTTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTG  >  NC_000913/3650645‑3650843

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.