New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4266888 =	NA (NA)	7 (0.050)	6/164	NT	NA	noncoding (1/97 nt)	RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	NC_000913	4266918 =	NA (NA)					noncoding (31/97 nt)	RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

CGTACATCCGCCAGAGGCACGACCTTTATAAGAGCATGAAAGAACATCAACTTATTGAATTTTTAGGATTTTATTGGCCGGATAAGGCATTCACGCCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4266993‑4266888 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTGTT  >  NC_000913/4266918‑4267016                                                                                                                                                                                                               CGTACATCCGCCAGAGGCACGACCTTTATAAGAGCATGAAAGAACATCAACTTATTGAATTTTTAGGATTTTATTGGCCGGATAAGGCATTCACGCCGCA                                                                                                           >  2:2796709/1‑100   TACATCCGCCAGAGGCACGACCTTTATAAGAGCATGAAAGAACATCAACTTATTGAATTTTTAGGATTTTATTGGCCGGATAAGGCATTCACGCCGCATC                                                                                                         >  1:706708/1‑100    ACATCCGCCAGAGGCACGACCTTTATAAGAGCATGAAAGAACATCAACTTATTGAATTTTTAGGATTTTATTGGCCGGATAAGGCATTCACGCCGCATCC                                                                                                        <  2:2229603/100‑1      ATCCGCCAGAGGCACGACCTTTATAAGAGCATGGAAGAACATCAACTTATTGAATTTTTAGGATTTTATTGGCCGGATAAGGCATTCACGCCGCATCCGG                                                                                                      >  2:739344/1‑100      ATCCGCCAGAGGCACGACCTTTATAAGAGCATGAAAGAACATCAACTTATTGAATTTTTAGGATTTTATTGGCCGGATAAGGCATTCACGCCGCATCCGG                                                                                                      >  1:2826154/1‑100       TCCGCCAGAGGCACGACCTTTATAAGAGCATGAAAGAACATCAACTTATTGAATTTTTAGGATTTTATTGGCCGGATAAGGCATTCACGCCGCATCCGGC                                                                                                     >  1:1212497/1‑100        CCGCCAGTGGCACGATCTTTATAAGAGCATGAAAGAGCATCAACTTACTGACTTATTAGGATTTTATTGGCCGGATAAGGCATTCACCCCGCATCCGGC                                                                                                     <  1:1840286/99‑1                                                                TAGGATTTTATTGGCCGGATAAGGCATTCACGCCGCATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCG                                            >  2:195950/1‑100                                                                     TTTTATTGGCCGGATAAGGCATTCACGCCGCATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCT                                       >  1:2692271/1‑100                                                                           TGGCCGGATAAGGCATTCACGCCGCATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCG                                 >  1:1033766/1‑100                                                                             GCCGGATAAGGCAGTCACGCCGCATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGA                               >  2:2550693/1‑100                                                                              CCGGATAAGGCATTCACGCCGCATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGAT                              >  2:2949565/1‑100                                                                              CCGGATAAGGCATTCACGCCGCATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGAT                              >  1:975427/1‑100                                                                                   TAAGGCATTCACGCCGCATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGACTCTGGCGGATGTACG                         >  1:2979653/1‑100                                                                                                    ATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCAC        <  2:1281050/100‑1                                                                                                     TCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCTTGCCACTGGCGGATGTACGTTTGTCATGAGTCTCAat       >  1:1797087/1‑98                                                                                                      CCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTC      >  2:2479139/1‑100                                                                                                      CCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTC      >  1:3644682/1‑100                                                                                                      CCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTC      >  2:3744623/1‑100                                                                                                       CGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCT     >  1:1866062/1‑100                                                                                                       CGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCT     >  1:3271668/1‑100                                                                                                         GCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTGT   <  2:26027/100‑1                                                                                                          CCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTGTT  <  2:2426800/100‑1                                                                                                          CCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTGTT  >  2:2434769/1‑100                                                                                                                                                                                                               CGTACATCCGCCAGAGGCACGACCTTTATAAGAGCATGAAAGAACATCAACTTATTGAATTTTTAGGATTTTATTGGCCGGATAAGGCATTCACGCCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4266993‑4266888 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTGTT  >  NC_000913/4266918‑4267016

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.