New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4636809	141 (1.010)	5 (0.040)	5/164	NT	3.5%	coding (114/1425 nt)	creC	sensory histidine kinase in two‑component regulatory system with CreB or PhoB
	?	NC_000913	= 4636834	144 (1.120)					coding (139/1425 nt)	creC	sensory histidine kinase in two‑component regulatory system with CreB or PhoB
Rejected: Frequency below cutoff threshold.

GGCATGCGGTTGTTGCTGGGCTATTTTTTACTGGTGGCGGTGGCAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4636705‑4636809 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcaacgTTGCGGTGTCGATCAACGTCCCCTCCGTTGCTCTTCGCACGCCCGGTTTAACTTCTTTGACAAAAATGGCCAGTACGAACCAGGCTGCCACCGCCACCA  <  NC_000913/4636834‑4636736                                                                                                                                                                                                              GGCATGCGGTTGTTGCTGGGCTATTTTTTACTGGTGGCGGTGGCAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAG                                                                                                          <  2:224944/100‑1  GCATGCGGTTGTTGCTGGGCTATTTTTTACTGGTGGCGGTGGCAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGC                                                                                                         <  2:3494694/100‑1  GCATGCGGTTGTTGCTGGGCTATTTTTTACTGGTGGCGGTGGCAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGC                                                                                                         >  2:2260197/1‑100    ATGCGGTTGTTGCTGGGCTATTTTTTACTGGTGGCGGTGGCAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAA                                                                                                       >  2:2673300/1‑100     gGCGGTTGTTGGTGGGCTATTTTTTACTGGTGGCGGGGGCAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAAC                                                                                                      <  1:3531830/99‑1     TGCGGTTGTTGCTGGGCTATTTTTTACTGGTGGCGGTGGCAGCCTGGTTCGTACTGGCCATTCTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAAC                                                                                                      <  1:2015378/100‑1      GCGGTTGTTGCTGGGCTATTTTTTACTGGTGGCGGTGGCAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACG                                                                                                     >  1:2439544/1‑100      GCGGTTGTTGCTGGGCTATTTTTTACTGGTGGCGGTGGCAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACG                                                                                                     <  1:2009119/100‑1                                     GCGGTGGCAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGTTGCGGTGTCGATCAACGTCCCCTCCGTTGC                                                                      <  2:1012516/100‑1                                       GGTGGCAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGTTGCGGTGTCGATCAACGTCCCCTCCGTTGCTC                                                                    <  1:3096629/100‑1                                          GGCAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGTTGCGGTGTCGATCAACGTCCCCTCCGTTGCTCTTC                                                                 <  1:2581031/100‑1                                           GCAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGTTGCGGTGCCGATCAACGTCCGCTCCGTTGCTCTTCG                                                                <  1:2472094/100‑1                                                 tcGTTCGTACTGGATAGTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGTTGCGGTGGCGATCAACGTCCCCTCCGTTGCT                                                                     <  1:26191/87‑1                                                                                                   AGCAACGTTGCGGTGTCGATCAACGTCCCCTCCGTTGCTCTTCGCACGCCCGGTTTAACTTCTTTGACAAAAATGGCCAGTACGAACCAGGCTGCCACCG        <  2:1618662/100‑1                                                                                                   AGCAACGTTGCGGTGTCGATCAACGTCCCCTCCGTTGCTCTTCGCACGCCCGGTTTAACTTCTTTGACAAAAATGGCCAGTACGAACCAGGCTGCCACCG        <  2:918155/100‑1                                                                                                    GCAACGTTGCGGTGTCGATCAACGTCCCCTCCGTTGCTCTTCGCACGCCCGGTTTAACTTCTTTGACAAAAATGGCCAGTACGAACCAGGCTGCCACCGC       >  1:651886/1‑100                                                                                                    GCAACGTTGCGGTGTCGATCAACGTCCCCTCCGTTGCTCTTCGCACGCCCGGTTTAACTTCTTTGACAAAAATGGCCAGTACGAACCAGGCTGCCACCGC       >  2:1749419/1‑100                                                                                                      AACGTTGCGGTGTCGATCAACGTCCCCTCCGTTGCTCTTCGCACGCCCGGTTTAACTTCTTTGACAAAAATGGCCAGTACGAACCAGGCTGCCACCGCCA     <  2:686745/100‑1                                                                                                        CGTTGCGGTGTCGATCAACGTCCCCTCCGTTGCTCTTCGCACGCCCGGTTTAACTTCTTTGACAAAAATGGCCAGTACGAACCAGGCTGCCACCGCCACC   <  2:1951182/100‑1                                                                                                        CGTTGCGGTGCCGATCAACGTCCCCTCCGTTGCTCTTCGCACGCCCGGTTTAACTTCTTTGACAAACATCGCCAGTACGAACCAGGCTGCCACCGCCACC   <  1:2500415/100‑1                                                                                                         GTTGCGGTGTCGATCAACGTCCCCTCCGTTGCTCTTCGCACGCCCGGTTTAACTTCTTTGACAAAAATGGCCAGTACGAACCAGGCTGCCACCGCCACCA  <  2:2622483/100‑1                                                                                                         GTTGCGGTGTCGATCAACGTCCCCTCCGTTGCTCTTCGCACGCCCGGTTTAACTTCTTTGACAAAAATGGCCAGTACGAACCAGGCTGCCACAGCCACCA  >  1:2830272/1‑100                                                                                                                                                                                                              GGCATGCGGTTGTTGCTGGGCTATTTTTTACTGGTGGCGGTGGCAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4636705‑4636809 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcaacgTTGCGGTGTCGATCAACGTCCCCTCCGTTGCTCTTCGCACGCCCGGTTTAACTTCTTTGACAAAAATGGCCAGTACGAACCAGGCTGCCACCGCCACCA  <  NC_000913/4636834‑4636736

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.