New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4636809141 (1.010)5 (0.040) 5/164 NT 3.5% coding (114/1425 nt) creC sensory histidine kinase in two‑component regulatory system with CreB or PhoB
?NC_000913 = 4636834 144 (1.120)coding (139/1425 nt) creC sensory histidine kinase in two‑component regulatory system with CreB or PhoB
Rejected: Frequency below cutoff threshold.

Only 100 of 167 total aligned reads displayed.

CTGGTGGCGGTGGCAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTT  >  NC_000913/4636735‑4636932
                                                                                                   |                                                                                                  
 tggtggCTGTGGCAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAAc                                                                                                   >  1:2830272‑M2/1‑99 (MQ=255)
  ggtggcggtggcAGCCTGGTTCGTACTGGCGATGTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGGCACCGCAAcg                                                                                                  <  1:2500415‑M2/100‑3 (MQ=255)
  ggtggcggtggcAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAAcg                                                                                                  <  2:1951182‑M2/100‑3 (MQ=255)
      gcggtggcAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAAcgttgc                                                                                              >  1:651886‑M2/1‑94 (MQ=255)
      gcggtggcAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAAcgttgc                                                                                              >  2:1749419‑M2/1‑94 (MQ=255)
       cggtggcAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAAcgttgct                                                                                             <  2:918155‑M2/100‑8 (MQ=255)
        ggtggcAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTg                                                                                            <  1:1406594/100‑1 (MQ=255)
           ggcAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCg                                                                                         <  1:1094411/100‑1 (MQ=255)
            gcAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCgg                                                                                        <  2:744374/100‑1 (MQ=255)
            gcAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCgg                                                                                        <  1:517683/100‑1 (MQ=255)
             cAGCCTGTTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGa                                                                                       >  2:1997406/1‑100 (MQ=255)
             cAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGa                                                                                       >  2:224959/1‑100 (MQ=255)
             cAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGa                                                                                       >  2:2997997/1‑100 (MQ=255)
              aGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAg                                                                                      <  2:1199614/100‑1 (MQ=255)
              aGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAg                                                                                      <  2:3032381/100‑1 (MQ=255)
              aGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAg                                                                                      <  1:1827451/100‑1 (MQ=255)
                ccTGGTTCGTACTGGCCATTTTTTTTAATTTAGTTAAACCGGGCGTGCGAAGAGCAACGTAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGACCt                                                                                    >  1:842324/1‑100 (MQ=255)
                  tGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTgg                                                                                  <  2:3162696/100‑1 (MQ=255)
                   ggTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGgc                                                                                 >  1:3795493/1‑100 (MQ=255)
                   ggTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGgc                                                                                 >  1:2784245/1‑100 (MQ=255)
                    gTTCGGACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGgcg                                                                                <  1:3114159/100‑1 (MQ=255)
                       cGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGt                                                                             >  2:1136878/1‑100 (MQ=255)
                         tACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGGGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTc                                                                            <  1:2730338/99‑1 (MQ=255)
                         tACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTcc                                                                           >  1:3720826/1‑100 (MQ=255)
                         tACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTcc                                                                           <  1:3660466/100‑1 (MQ=255)
                         tACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTcc                                                                           <  1:2648788/100‑1 (MQ=255)
                         tACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTcc                                                                           <  1:2585966/100‑1 (MQ=255)
                          aCTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTccc                                                                          >  2:33745/1‑100 (MQ=255)
                             ggCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGAt                                                                       >  2:55124/1‑100 (MQ=255)
                             ggCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGAt                                                                       >  1:1165738/1‑100 (MQ=255)
                             agCCATTTTTGTCAAAGCCGTTAAACCGGGCGTGCGACGAGCGACAGAGGGGATGTCCATCGACAGAGCGAGGTAGCGAGCGGAGcggagatgg                                                                             >  1:3003356/2‑86 (MQ=255)
                                cATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTg                                                                    >  1:754091/1‑100 (MQ=255)
                                cATTTTTATCAAAGATGTTAAACCTTGTGTGCGAAGTGAAACGGAGGCGACGTTGATCTACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGAttt                                                                     <  1:3456251/99‑1 (MQ=255)
                                 aTTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGc                                                                   >  2:619359/1‑100 (MQ=255)
                                  tttttGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCTCGATTTGc                                                                   >  1:35983/1‑99 (MQ=255)
                                  tttttGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTg                                                                    >  2:3682076/1‑98 (MQ=255)
                                  tttttGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGct                                                                  >  2:2641697/1‑100 (MQ=255)
                                   ttttGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGctc                                                                 >  2:416134/1‑100 (MQ=255)
                                   ttttGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGctc                                                                 >  2:416646/1‑100 (MQ=255)
                                       gTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTg                                                             >  2:645802/1‑100 (MQ=255)
                                        tCAAAGAAGTTAAACCGGGCGTCCGAAGAGCGACGGATGGGACGTTGTTCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTgg                                                            <  1:2563568/100‑1 (MQ=255)
                                         cAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTggg                                                           >  2:1096681/1‑100 (MQ=255)
                                         cAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTggg                                                           >  2:2629160/1‑100 (MQ=255)
                                         cAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTggg                                                           <  1:551398/100‑1 (MQ=255)
                                          aaaGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTgggg                                                          >  1:3418541/1‑100 (MQ=255)
                                          aaaGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTgggg                                                          >  1:1185946/1‑100 (MQ=255)
                                           aagaagTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGa                                                         >  2:1852064/1‑100 (MQ=255)
                                            agaagTTAAACCGGGCATGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGTGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGAc                                                        >  1:1334230/1‑100 (MQ=255)
                                             gaagTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGAcc                                                       <  1:2740410/100‑1 (MQ=255)
                                               agTTAAACCGGGCGTGCGAAGAGCAAGGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTAATCTCTGGGGAc                                                        >  1:3157341/1‑97 (MQ=255)
                                               agTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCa                                                     >  2:139149/1‑100 (MQ=255)
                                               agTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCa                                                     >  2:3091389/1‑100 (MQ=255)
                                                gTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCaa                                                    >  1:2092252/1‑100 (MQ=255)
                                                 ttAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAAc                                                   >  2:372754/1‑100 (MQ=255)
                                                    aaCCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCa                                                >  1:980400/1‑100 (MQ=255)
                                                     aCCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCa                                                <  1:358282/99‑1 (MQ=255)
                                                     aCCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCAt                                               <  1:260310/100‑1 (MQ=255)
                                                     aCCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCAt                                               >  1:1608741/1‑100 (MQ=255)
                                                       cGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATgg                                             <  2:2371371/100‑1 (MQ=255)
                                                        gggCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATggg                                            <  2:143776/100‑1 (MQ=255)
                                                        gggCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATggg                                            <  2:3414717/100‑1 (MQ=255)
                                                        gggCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATggg                                            <  2:3635297/100‑1 (MQ=255)
                                                        gggCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATggg                                            >  2:1071833/1‑100 (MQ=255)
                                                        gggCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATggg                                            <  1:537153/100‑1 (MQ=255)
                                                        gggCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATggg                                            <  2:116025/100‑1 (MQ=255)
                                                         ggCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGc                                           <  1:249101/100‑1 (MQ=255)
                                                           cGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCaa                                         >  1:1319032/1‑100 (MQ=255)
                                                            gTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAAc                                        <  2:2361107/100‑1 (MQ=255)
                                                              gtgAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGGCCCAACGCATGGGc                                           <  1:3780469/93‑1 (MQ=255)
                                                              gCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTg                                      >  2:1848113/1‑100 (MQ=255)
                                                              gCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTg                                      >  2:163295/1‑100 (MQ=255)
                                                               ccaaGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTgg                                     >  2:2570428/3‑100 (MQ=255)
                                                                gAAGAGCAACGGAGGGGACGTTGATCGACACCGCAAcgttgctcttcgcacgcccggtttaacttctttgacaaaaatggccagtacgaaccaggctgcc                                    <  1:2581031‑M2/100‑65 (MQ=255)
                                                                gAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGgc                                    <  2:1689780/100‑1 (MQ=255)
                                                                 aaGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGgcg                                   >  2:1514759/1‑100 (MQ=255)
                                                                   gagCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGTGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCa                                 <  1:2109731/100‑1 (MQ=255)
                                                                    agCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAg                                >  1:1679509/1‑100 (MQ=255)
                                                                     gCAACGGAGGGGACGTTGATCGACACCGCAAcgttgctcttcgcacgcccggtttaacttctttgacaaaaatggccagtacgaaccaggctgccaccgc                               <  2:1012516‑M2/100‑70 (MQ=255)
                                                                     gCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAgg                               <  1:3091088/100‑1 (MQ=255)
                                                                     gCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAgg                               <  1:1910880/100‑1 (MQ=255)
                                                                     gCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAg                                >  1:3001922/1‑99 (MQ=255)
                                                                       aaCGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCg                             >  1:3534327/1‑100 (MQ=255)
                                                                          ggAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGttt                          <  1:95251/100‑1 (MQ=255)
                                                                             ggggACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAAt                       <  2:2734272/100‑1 (MQ=255)
                                                                               ggACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCa                     >  2:3716184/1‑100 (MQ=255)
                                                                                  cGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCt                  >  1:2190061/1‑100 (MQ=255)
                                                                                  cGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCt                  <  1:1514753/100‑1 (MQ=255)
                                                                                    ttGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTac                >  1:1020248/1‑100 (MQ=255)
                                                                                     tGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTaca               >  1:1035255/1‑100 (MQ=255)
                                                                                      gATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTacaa              >  2:1793963/1‑100 (MQ=255)
                                                                                       aTCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTacaac             <  1:115443/100‑1 (MQ=255)
                                                                                         cGACACCGCAACGTTGCTGGAGGAGCTGGCGCGTCCCGATTTGCTCTCGGGGGACCCAACGCATGGCCAACTGCCGCAGGCGTTTAATCCGCTccaaca            >  1:360399/1‑99 (MQ=255)
                                                                                          gACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATc          >  1:1982704/1‑100 (MQ=255)
                                                                                           acacCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCg         >  1:2187931/1‑100 (MQ=255)
                                                                                            cacCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGc        <  2:2168133/100‑1 (MQ=255)
                                                                                             acCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGcc       <  2:3423665/100‑1 (MQ=255)
                                                                                             acCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGcc       >  2:3274690/1‑100 (MQ=255)
                                                                                              ccGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGccc      >  1:2947201/1‑100 (MQ=255)
                                                                                                  aaCGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGttt  >  1:2366405/1‑100 (MQ=255)
                                                                                                  aaCGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGACGTTTAATCAGCTACAACATCGCCCGttt  >  1:1522046/1‑100 (MQ=255)
                                                                                                   |                                                                                                  
CTGGTGGCGGTGGCAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTT  >  NC_000913/4636735‑4636932

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.