| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 409055 | NA (NA) | 12 (0.090) | 8/164 | NT | NA | noncoding (4/37 nt) | REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 409088 | NA (NA) | noncoding (37/37 nt) | REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
TCCATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/408958‑409055‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGACGCCTGCCGCGTCTTATCCGGCGTACGAAGCCACACCAGGCATATAATTATTCGCTACGGCGAGCAATAATTTTTAGCGCAGCAATATTATGCGT < NC_000913/409088‑408983 TCCATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGC > 2:690349/1‑100TCCATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGC > 1:3232057/1‑100TCCATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGC > 1:3332441/1‑100 CCATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCC > 2:1440661/1‑100 CCATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCC < 2:3452556/100‑1 CCATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCC < 2:2394723/100‑1 CATGGAGCAGGTTACAGCGTAAAACGCATAATATTGCTTCGCTAAAAATTATTGCCCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCC < 1:1252883/99‑1 CATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCG > 2:2362247/1‑100 CATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCG < 1:1236337/100‑1 ATGGAGGAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCG < 1:1576297/99‑1 ATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGG < 2:877363/100‑1 ATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGG < 1:197936/100‑1 ATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGG < 1:1139355/100‑1 ATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGG < 2:2803094/100‑1 ATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGG < 1:633882/100‑1 GGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGAT > 2:3261927/1‑100 GGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGATGTGGCTTCGTACGGCGGA > 1:3645821/1‑99 GCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATGCGACGCCTGCCGCGTCTTATC < 2:322069/100‑1 CATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATGCGACGCCTGCCGCGTCTTATCC < 1:425447/100‑1 CATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATGCGACGCCTGCCGCGTCTTATCC < 1:2000258/100‑1 CATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATGCGACGCCTACCGCGTCTTATCC < 2:391842/100‑1 TAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATGCGACGCCTGCCGCGTCTTATCCGG < 2:2611352/100‑1 TAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATGCGACGCCTGCCGCGTCTTATCCGG < 2:3463795/100‑1 AATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATGCGACGCCTGCCGCGTCTTATCCGGC < 1:92118/100‑1 AATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATGCGACGCCTGCCGCGTCTTATCCGGC < 1:1650177/100‑1 TATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATGCGACGCCTGCCGCGTCTTATCCGGCGT < 2:933336/100‑1 ATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATGCGACGCCTGCCGCGTCTTATCCGGCGTA < 2:3590455/100‑1 TGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATGCGACGCCTGCCGCGTCTTATCCGGCGTACGAAG < 1:368521/100‑1 GCGCTAAAAATTATTGCTCGCCGTAGCGAATATTTATATGCCTGGTGTGGCTTCGTACGCCGGATGCGACGCCTGCCGCGTCTTATCCGGCGTACGAA < 1:3660925/98‑1 GCCGGATGCGACGCCTGCCGCGTCTTATCCGGCGTACGAAGCCACACCAGGCATATAATTATTCGCTACGGCGAGCAATAATTTTTAGCGCAGCAATATT < 2:1449203/100‑1 CCGGATGCGACGCCTGCCGCGTCTTATCCGGCGTACGAAGCCACACCAGGCATATAATTATTCGCTACGGCGAGCAATAATTTTTAGCGCAGCAATATTA < 2:1581630/100‑1 CGGATGCGACGCCTGCCGCGTCTTATCCGGCGTACGAAGCCACACCAGGCATATAATTATTCGCTACGGCGAGCAATAATTTTTAGCGCAGCAATATTAT > 2:1234058/1‑100 GGATGCGACGCCTGCCGCGTCTTATCCGGCGTACGAAGCCACACCAGGCATATAATTATTCGCTACGGCGAGCAATAATTTTTAGCGCAGCAATATTATG > 1:1614404/1‑100 GGATGCGACGCCTGCCGCGTCTTATCCGGCGTACGAAGCCACACCAGGCATATAATTATTCGCTACGGCGAGCAATAATTTTTAGCGCAGCAATATTATG < 1:1193820/100‑1 GGATGCGACGCCTGCCGCGTCTTATCCGGCGTACGAAGCCACACCAGGCATATAAGTATTCGCTACGGCGAGCAATAATTGTTAGCGCAGCAATATTATG > 1:3619367/1‑100 GATGCGACGCCTGCCGCGTCTTATCCGGCGTACGAAGCCACACCAGGCATATAATTATTCGCTACGGCGAGCAATAATTTTTAGCGCAGCAATATTATGC > 2:3241844/1‑100 GATGCGACGCCTGCCGCGTCTTATCCGGCGTACGAAGCCACACCAGGCATATAATTATTCGCTACGGCGAGCAATAATTTTTAGCGCAGCAATATTATGC < 2:1840971/100‑1 GATGCGACGCCTGCCGCGTCTTATCCGGCGTACGAAGCCACACCAGGCATATAATTATTCGCTACGGCGAGCAATAATTTTTAGCGCAGCAATATTATGC > 2:3410967/1‑100 GATGCGACGCCTGCCGCGTCTTATCCGGCGTACGAAGCCACACCAGGCATATAATTATTCGCTACGGCGAGCAATAATTTTTAGCGCAGCAATATTATGC < 1:355213/100‑1 GATGCGACGCCTGCCGCGTCTTATCCGGCGTACGAAGCCACACCAGGCATATAATTATTCGCTACGGCGAGCAATAATTTTTAGCGCAGCAATATTATGC < 1:2139222/100‑1 GATGCGACGCCTGCCGCGTCTTATCCGGCGTACGAAGCCACACCAGGCATATAATTATTCGCTACGGCGAGCAATAATTTTTAGCGCAGCAATATTATGC < 1:1234770/100‑1 ATGCGACGCCTGCCGCGTCTTATCCGGCGTACGAAGCCACACCAGGCATATAATTATTCGCTACGGCGAGCAATAATTTTTAGCGCAGCAATATTATGCG > 2:3159696/1‑100 ATGCGACGCCTGCCGCGTCTTATCCGGCGTACGAAGCCACACCAGGCATATAATTATTCGCTACGGCGAGCAATAATTTTTAGCGCAGCAATATTATGCG < 2:3702049/100‑1 TGCGACGCCTGCCGCGTCTTATCCGGCGTACGAAGCCACACCAGGCATATAATTATTCGCTACGGCGAGCAATAATTTTTAGCGCAGCAATATTATGCGT > 2:1147480/1‑100 TCCATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/408958‑409055‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGACGCCTGCCGCGTCTTATCCGGCGTACGAAGCCACACCAGGCATATAATTATTCGCTACGGCGAGCAATAATTTTTAGCGCAGCAATATTATGCGT < NC_000913/409088‑408983 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |