BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 409055	NA (NA)	12 (0.090)	8/164	NT	NA	noncoding (4/37 nt)	REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences
*	?	NC_000913	= 409088	NA (NA)	12 (0.090)	8/164	NT	NA	noncoding (37/37 nt)	REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 207 total aligned reads displayed.

CGTCCATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTA  >  NC_000913/408956‑409154

cGTCCATGGAGCAAGTTACAGCGCAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTAc                                                                                                     >  1:3178172/1‑100 (MQ=255)

   ccATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACgcc                                                                                                  >  2:1440661‑M1/1‑97 (MQ=255)

   ccATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACgcc                                                                                                  <  2:2394723‑M1/100‑4 (MQ=255)

    cATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACgccg                                                                                                 >  2:2362247‑M1/1‑96 (MQ=255)

     aTGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACgccgg                                                                                                <  1:197936‑M1/100‑6 (MQ=255)

     aTGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACgccgg                                                                                                <  2:2803094‑M1/100‑6 (MQ=255)

     aTGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACgccgg                                                                                                <  2:877363‑M1/100‑6 (MQ=255)

     aTGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACgccgg                                                                                                <  1:633882‑M1/100‑6 (MQ=255)

       ggAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACgccggat                                                                                              >  2:3261927‑M1/1‑93 (MQ=255)

       ggAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGATGTGGCTTCGTACggcgga                                                                                               >  1:3645821‑M1/1‑93 (MQ=255)

          gCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAg                                                                                           >  2:3541927/1‑100 (MQ=255)

           cAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGa                                                                                          >  2:32219/1‑100 (MQ=255)

                tACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCgg                                                                                     <  2:1613358/100‑1 (MQ=255)

                tACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCgg                                                                                     >  1:817770/1‑100 (MQ=255)

                tACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCgg                                                                                     >  1:246454/1‑100 (MQ=255)

                 aCAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCgg                                                                                     <  1:3541900/99‑1 (MQ=255)

                 aCAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGc                                                                                    <  2:587090/100‑1 (MQ=255)

                   aGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAg                                                                                  <  2:3073755/100‑1 (MQ=255)

                     cGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGc                                                                                >  2:885133/1‑100 (MQ=255)

                       tAAAACGCACAATATTGCTGCGCTAAAAATTATTGCTCACCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTCCGTCAGCTAAGACGCGGCAg                                                                                  <  1:2262951/96‑1 (MQ=255)

                         aaaCGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCg                                                                            >  1:1139844/1‑100 (MQ=255)

                         aaaCGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCg                                                                            <  2:1205799/100‑1 (MQ=255)

                          aaCGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGc                                                                           >  1:3482624/1‑100 (MQ=255)

                            cGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCAT                                                                         >  2:3159696‑M2/1‑100 (MQ=255)

                            cGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCAT                                                                         <  2:3702049‑M2/100‑1 (MQ=255)

                             gCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATC                                                                        <  1:1234770‑M2/100‑1 (MQ=255)

                             gCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATC                                                                        <  1:2139222‑M2/100‑1 (MQ=255)

                             gCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATC                                                                        <  2:1840971‑M2/100‑1 (MQ=255)

                              cATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACgccggatgcgacgcctaccgcgtcttatcc                                                                       <  2:391842‑M1/100‑31 (MQ=255)

                              cATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCC                                                                       >  1:1614404‑M2/1‑100 (MQ=255)

                                taataTTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACgccggatgcgacgcctgccgcgtcttatccgg                                                                     <  2:3463795‑M1/100‑33 (MQ=255)

                                taataTTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACgccggatgcgacgcctgccgcgtcttatccgg                                                                     <  2:2611352‑M1/100‑33 (MQ=255)

                                 aataTTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACgccggatgcgacgcctgccgcgtcttatccggc                                                                    <  1:92118‑M1/100‑34 (MQ=255)

                                   tatTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACgccggatgcgacgcctgccgcgtcttatccggcgt                                                                  <  2:933336‑M1/100‑36 (MQ=255)

                                   tatTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCAt                                                                  <  2:2785386/100‑1 (MQ=255)

                                     ttGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTa                                                                >  1:671878/1‑100 (MQ=255)

                                       gctgcGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTaaa                                                              <  2:139525/100‑1 (MQ=255)

                                        ctgcGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTaa                                                               >  2:3360692/1‑98 (MQ=255)

                                        ctgcGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAg                                                             <  1:1433041/100‑1 (MQ=255)

                                        ctgcGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAg                                                             >  2:3341835/1‑100 (MQ=255)

                                        ctgcGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAg                                                             <  2:1234775/100‑1 (MQ=255)

                                        ctgcGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAg                                                             <  2:1496916/100‑1 (MQ=255)

                                        ctgcGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAg                                                             <  1:1302739/100‑1 (MQ=255)

                                        ctgcGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAg                                                             <  1:1506549/100‑1 (MQ=255)

                                        ctgcGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAg                                                             <  2:3615277/100‑1 (MQ=255)

                                        ctgcGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAg                                                             >  1:1580814/1‑100 (MQ=255)

                                         tgcGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACgccggatgcgacgcctgccgcgtcttatccggcgtacgaag                                                            <  1:368521‑M1/100‑42 (MQ=255)

                                         tgcGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAgg                                                            <  1:3571463/100‑1 (MQ=255)

                                          gcgcTAAAAATTATTGCTCGCCGTAGCGAATATTTATATGCCTGGTGTGGCTTCGTACgccggatgcgacgcctgccgcgtcttatccggcgtacgaa                                                             <  1:3660925‑M1/98‑41 (MQ=255)

                                          gcgcTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGCTAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGa                                                           >  1:3315586/1‑100 (MQ=255)

                                               aaaaaTTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATc                                                      >  2:810839/1‑100 (MQ=255)

                                                aaaaTTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACACCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCa                                                     >  2:2584080/1‑100 (MQ=255)

                                                 aaaTTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAg                                                    >  1:1847258/1‑100 (MQ=255)

                                                 aaaTTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCATCGTACGCAGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAg                                                    <  1:796700/100‑1 (MQ=255)

                                                  aaTTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGc                                                   >  1:1088210/1‑100 (MQ=255)

                                                   attattGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCa                                                  >  1:3363476/1‑100 (MQ=255)

                                                         gCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAAc                                            >  1:3292108/1‑100 (MQ=255)

                                                         gCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAAc                                            >  2:1726245/1‑100 (MQ=255)

                                                             gCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTtg                                        <  2:1872378/100‑1 (MQ=255)

                                                             gCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTtg                                        <  2:736816/100‑1 (MQ=255)

                                                               cGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTtgtg                                      <  1:2305847/100‑1 (MQ=255)

                                                                gTAGCTAATAATTATATGCCTGGTGTGGCTTCTTACGCCGGATAAAACTCGGCAGGCGTCGCAGCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGc                                     <  1:3461680/100‑1 (MQ=255)

                                                                gTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGc                                     <  1:1534183/100‑1 (MQ=255)

                                                                gTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGc                                     <  2:3422343/100‑1 (MQ=255)

                                                                gTAGCGAATAAGTATATGGCTGGTGTGGATTCGTAAGCCGGATAAGACGCGGCAGTCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGc                                     <  1:737353/100‑1 (MQ=38)

                                                                 tAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCt                                    <  2:970478/100‑1 (MQ=255)

                                                                  aGCGAATAATTATATGCCTGGTGTGGCTTGGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTGAAGGAAAATCAGCAATTAACGTTGTGCt                                    >  1:2340001/1‑99 (MQ=255)

                                                                   gCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTc                                  >  1:2053907/1‑100 (MQ=255)

                                                                   gCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTc                                  >  2:706237/1‑100 (MQ=255)

                                                                   gCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTc                                  <  1:3780503/100‑1 (MQ=255)

                                                                   gCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTc                                  >  1:2181366/1‑100 (MQ=255)

                                                                     gAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCACTTAACGTTCTGCTTAGc                                >  1:1648316/1‑100 (MQ=255)

                                                                     gAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGc                                >  2:3791536/1‑100 (MQ=255)

                                                                     gAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGc                                >  2:3191853/1‑100 (MQ=255)

                                                                       ataatTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCACCCGGAATTAAAGGAAAATCAGCAAGGAACGTTGTGCTTCGcaa                              <  1:1012173/100‑3 (MQ=39)

                                                                        taatTATATGCCTGGTGTGGCTACGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAGCGTTGTGCTTCGCCAc                             <  2:1911916/100‑1 (MQ=255)

                                                                           ttATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTa                          <  2:3504723/100‑1 (MQ=255)

                                                                           ttATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTa                          >  1:1722289/1‑100 (MQ=255)

                                                                              tatGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATc                       <  1:114574/100‑1 (MQ=255)

                                                                                ggCCTGGTGTGTCTTCGTACGCGCGATAAGACGCGGCAGTCGTCGCCTCCGGCATTAAAGCAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCt                     <  1:1212247/99‑1 (MQ=255)

                                                                                  ccTGGTGTGGCTTCGTACGCCGGATACGACGCGGCAGGCGTCGCATCCGGCATTGAAGGAGAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTc                   >  1:61692/1‑100 (MQ=255)

                                                                                  ccTGGTGTGGCTTCGTACGCCGGATAAGATGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTc                   >  2:1178415/1‑100 (MQ=255)

                                                                                  ccTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTTTGCTTCGCCACCTAATCCTTc                   >  2:1592260/1‑100 (MQ=255)

                                                                                  ccTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTc                   <  1:1440655/100‑1 (MQ=255)

                                                                                  ccTGGTGTGACTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTc                   <  2:672818/100‑1 (MQ=255)

                                                                                   cTGGTGTGGCTTCGTACGCCGGCTCAGACGCGGCGGGCGTCGCATCCGGCATTAAAGGAAAATCAGCATTTAACGTTTTGCTTAGCCACCTAATCCTTc                   >  1:993265/1‑99 (MQ=255)

                                                                                    tGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCaa                 <  2:1139849/100‑1 (MQ=255)

                                                                                    tGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCa                  <  1:3079907/99‑1 (MQ=255)

                                                                                         tgGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCATCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCa              <  1:2391764/98‑1 (MQ=255)

                                                                                         tgGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAgg            <  2:3205075/100‑1 (MQ=255)

                                                                                         tgGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAgg            <  1:2708098/100‑1 (MQ=255)

                                                                                         tgGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAgg            <  2:2019145/100‑1 (MQ=255)

                                                                                          ggCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGt           >  1:3633131/1‑100 (MQ=255)

                                                                                           gCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAgg            >  2:1111621/1‑98 (MQ=255)

                                                                                           gCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGtt          >  1:1245031/1‑100 (MQ=255)

                                                                                               cGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCGTTCAATCAGGTTTTGa      >  1:2220821/1‑100 (MQ=255)

                                                                                               cGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATGAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGa      <  1:626145/100‑1 (MQ=255)

                                                                                                gTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGaa     >  2:1069433/1‑100 (MQ=255)

                                                                                                 tACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCgtacgaagccacaccaggcatataattattcgctacggcgagcaataatttttagcgcagcaat    <  2:3590455‑M2/100‑65 (MQ=255)

                                                                                                   cGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTa  >  1:2773783/1‑100 (MQ=255)

CGTCCATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTA  >  NC_000913/408956‑409154

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.