| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2232735 | NA (NA) | 9 (0.070) | 7/166 | NT | NA | intergenic (+7/‑143) | cdd/sanA | cytidine/deoxycytidine deaminase/DUF218 superfamily vancomycin high temperature exclusion protein |
| ? | NC_000913 | = 2232765 | NA (NA) | noncoding (30/34 nt) | REP155 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP155 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
AAGCCGATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGG‑‑Tgccgga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2232637‑2232735‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCATCCC < NC_000913/2232765‑2232661 AAGCCGATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGG‑‑TG > 2:1427301/1‑100 CCGATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGG‑‑TGCCG > 2:153422/1‑100 CCGATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGG‑‑TGCCG > 1:2742651/1‑100 CCGATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGG‑‑TGCCG < 2:243512/100‑1 CGATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACCGTATCGACCGAGTGCTTCTCGCTTTAGCCTGG‑‑TGCCGG < 1:2349528/100‑1 CGATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGG‑‑TGCCGG > 2:2147683/1‑100 CGATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGG‑‑TGCCGG < 2:738361/100‑1 CGATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGG‑‑TGCCGG > 2:3801901/1‑100 GATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGG‑‑TGCCGGA < 1:2401979/100‑1 GATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGG‑‑TGCCGGA < 1:3613122/100‑1 gaCACCTCGGCAACGCTGAAAGCTCTCGGCTGTCCCAGTATCGATCGAGTGCGTCTCGCTTAAGCCTGG‑‑TGCCGGACAAGGCGTTCACGCCGCATCCGGC < 1:3788922/98‑1 ccccaCCGCAACGCGGAAAGCTCTCGGCTGTCACAGTATCGACCTAGTGCTTCTCGCTTAAGCCTGG‑‑TGCCGGACAAGGCTTTCACGCCCCATCCGGCAC < 1:1553353/95‑1 CACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGG‑‑TGCCGGACAAGGCGTTCACGCCGCATCCGGCAC < 1:1666988/100‑1 CTCCGCAACGCTGAAAGCTCTCGGCTGTCACTGTATCGTCCTAGTGCTTCTCGCTTAAGCCTGG‑‑TGCCGGACAAGGCGTTCACGCCGCATCCGGCACCA < 1:2665255/99‑1 CTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGG‑‑TGCCGGACAAGGCGTTCACGCCGCATCCGGCACCAG < 1:1894190/100‑1 CCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGG‑‑TGCCGGACAAGGCGTTCACGCCGCATCCGGCACCAGG < 2:2398484/99‑1 CGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGGCAAGCCGGACAAGGCGTTCACGCCGCATCCGGCACCAGG < 2:3048813/100‑1 CGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGG‑‑TGCCGGACAAGGCGTTCACGCCGCATCCGGCACCAGGCT < 2:1559330/100‑1 ACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGG‑‑TGCCGGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAG < 2:174368/100‑1 GCCGGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGC > 2:1354642/1‑100 GCCGGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGC > 1:215372/1‑100 CGGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCAT > 2:1110337/1‑100 GGACAAGGCGTTCACGCCGCATCCGGCTCCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCATC < 2:2108521/100‑1 GGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCATC > 2:2458818/1‑100 GACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCATCC > 2:805508/1‑100 ACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCATCCC < 2:1165038/100‑1 ACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAACCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCATCCC < 1:2435013/100‑1 AAGCCGATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGG‑‑Tgccgga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2232637‑2232735‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCATCCC < NC_000913/2232765‑2232661 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |