New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2304653	27 (0.190)	21 (0.160)	11/164	NT	16.3%	noncoding (237/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
	?	NC_000913	= 2304782	191 (1.490)					noncoding (366/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences

TCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2304548‑2304653 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcggatGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGC  <  NC_000913/2304782‑2304684                                                                                                                                                                                                               TCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGG                                                                                                           <  2:2456102/100‑1 TCACGCCGCATCCGACATCCAACGCCCCAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGG                                                                                                           <  1:1395952/100‑1  CACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGT                                                                                                          >  1:378462/1‑100    CGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTtg                                                                                                        >  1:1797011/1‑98    CGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTCGCGCGTCGTATCAGGCCTACACTGCTGAGAAGTGCGCCCCCCCGTAGGgt                                                                                                         >  1:3329271/1‑97     GCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGG                                                                                                       <  1:3414799/100‑1     GCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGG                                                                                                       >  2:1264018/1‑100      CCGCATCCGACATCCAACGGCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGA                                                                                                      <  2:1117706/100‑1      CCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGA                                                                                                      >  2:2987809/1‑100      CCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGA                                                                                                      <  1:234826/100‑1      CCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGAAGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGA                                                                                                      <  1:2670561/100‑1      CCGCATCCGACACCCAACGCCCGAGCGGGTTGCCTGATGCGACGCGGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTt                                                                                                         <  1:999821/97‑2       CGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGAT                                                                                                     <  1:2799657/100‑1       CGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGAT                                                                                                     <  1:3424397/100‑1        GCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTCGGTCGGAT                                                                                                     >  2:1138024/1‑99        GCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGAT                                                                                                     <  1:2469287/99‑1           TCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGAT                                                                                                     >  1:765912/1‑96            CCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGATGGCGCGGCTTATCAGGCCTACCCCCCTGTGACGTGCTCAACCCCGTAGGTCGGATcatg                                                                                                 >  1:540270/1‑95               ACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATGCGGCGTA                                                                                             <  2:2942231/100‑1                CATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTGCACCCCGTAGGTCGGACGCGGCG                                                                                               >  1:3677284/1‑97                   CCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATGCGGCGTttacg                                                                                         >  1:692568/1‑95                           CGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATGCGGCGTAACCGCCTTATCC                                                                                 <  1:1397159/100‑1                           CGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATGCGGCGTAACCGCCTTATCC                                                                                 <  1:1959962/100‑1                           CGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATGCGGCGTAACCGCCTTATCC                                                                                 <  2:2333992/100‑1                           CGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATGCGGCGTAACCGCCTTATCC                                                                                 <  1:3303860/100‑1                            GAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATGCGGCGTAACCGCCTTATCCg                                                                                <  1:2860375/100‑2                              GCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATGCGGCGTAACCGCCTTATCCAAC                                                                              <  2:894636/100‑1                              GCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATGCGGCGTAACCGCCTTATCCAA                                                                               <  1:1013286/99‑1                              GCCGGTTGCCTGATGCGACGCCGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATGCGGCGTAACCGCCTTATCCgan                                                                              <  1:1854930/100‑4                               CCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATGCGGCGTAACCGCCTTATCCAACC                                                                             <  2:692572/100‑1                               CCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATGCGGCGTAACCGCCTTATCCGACC                                                                             <  2:1005518/100‑1                                CGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATGCGGCGTAACCGCCTTATCCAACCT                                                                            <  2:2001792/100‑1                                CGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATGCGGCGTAACCGCCTTATCCAACCT                                                                            <  2:1579532/100‑1                                CGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATGCGGCGTAACCGCCTTA                                                                                    <  1:970880/92‑1                                    TGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATGCGGCGTAACCGCCTTATCCAACCTACGG                                                                        <  1:432517/100‑1                                     GCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATGCGGCGTAACCGCCTTATCCAACCTACGGG                                                                       <  2:2484896/100‑1                                            GCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATGCGGCGTAACCGCCTTATCCGACCTACGGGGTGGAGC                                                                <  2:3677312/100‑1                                                              ATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTGGGTTGGATGCGGCGTAACCGCCTTTTCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGG                                              <  1:37536/100‑1                                                              ATCAGGCCTACACCGCTGTGAAGTGCCCCACCCCGTAGGTTGGATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGG                                              <  1:37511/100‑1                                                                                           gcgttgcAGGTCGGATGCGGCGTGACCGCCTTATCCGACCTACGGGGTGCAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGC                      <  1:3660828/88‑1                                                                                            cgctagacgaCGGACGCGGCGTCTCCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGG                <  1:3767580/90‑1                                                                                                tgctcTCGGATGCTCCGTACCCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAC            <  1:293595/95‑1                                                                                                  AGGACGGATCGGGCGTAACCGCCTTCTCCAACCTACGGTGTGGAGGACTTCACAGCCGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCG          <  2:1693789/100‑1                                                                                                    GTCGGATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGC        <  1:1174670/100‑1                                                                                                    GTCGGATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGC        >  2:2337811/1‑100                                                                                                    GTCGGATGCGGCGTAACCGCCTTATCCAACCTACGGGGCGGAGCGCTGCACAGCGGTGTACGCCTGATAAGACCCGCCAGCGTCGCATCAGGCAA             >  1:3606245/1‑95                                                                                                      CGGATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTT      >  2:325416/1‑100                                                                                                       GGATTCGGCGTAACCGCCTTATCCACCCTACGGGGTGTAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTG     <  1:766694/100‑1                                                                                                       GGATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTcg     >  1:120745/1‑98                                                                                                       GGATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTG     <  2:289281/100‑1                                                                                                       GGATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTG     >  2:404289/1‑100                                                                                                       GGATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTG     <  1:3426235/100‑1                                                                                                        GATGCGGCGTGACCGCCTTATCCAACCTACGGGGTGGAGCACGTCGCAGCGGTGGAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGG    <  1:3334950/100‑1                                                                                                        GATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGG    >  2:3660856/1‑100                                                                                                        GATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGG    <  1:1933246/100‑1                                                                                                        GATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTG     >  1:1496950/1‑99                                                                                                        GATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCCTGG    >  2:3324947/1‑100                                                                                                         ATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGn   <  2:1786407/100‑2                                                                                                         ATGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGG   >  2:635972/1‑100                                                                                                          TGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGC  <  2:2540618/100‑1                                                                                                          TGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGC  >  2:2247491/1‑100                                                                                                          TGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGC  <  2:887298/100‑1                                                                                                          TGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGC  >  2:1189534/1‑100                                                                                                          TGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGC  >  2:709362/1‑100                                                                                                                                                                                                               TCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2304548‑2304653 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcggatGCGGCGTAACCGCCTTATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGC  <  NC_000913/2304782‑2304684

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.