New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2539608 =	NA (NA)	13 (0.100)	7/166	NT	NA	noncoding (2/36 nt)	REP175 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP175 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	2539638 =	NA (NA)					noncoding (32/36 nt)	REP175 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP175 (repetitive extragenic palindromic) element; contains 1 REP sequences

GAGTGAATGTTAAACGCCCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGGTTTGTAACCTGTAGACCTGATAAGACGCGCAAGCGTCGCATCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2539710‑2539608 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTTGTGCGAGAG  >  NC_000913/2539638‑2539736                                                                                                                                                                                                            GAGTGAATGTTAAACGCCCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGGTTTGTAACCTGTAGACCTGATAAGACGCGCAAGCGTCGCATC                                                                                                        <  1:1833263/100‑1  AGTGAATGTTAAACGCCCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGGTTTGTAACCTGTAGACCTGATAAGACGCGCAAGCGTCGCATCA                                                                                                       >  2:3604087/1‑100   GTGAATGTTAAACGCCCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGGTTTGTAACCTGTAGACCTGATAAGACGCGCAAGCGTCGCATCAG                                                                                                      >  2:2024727/1‑100   GTGAATGTTAAACGCCCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGGTTTGTAACCTGTAGACCTGATAAGACGCGCAAGCGTCGCATCAG                                                                                                      <  2:1775486/100‑1   GTGAATGTTAAACGCCCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGGTTTGTAACCTGTAGACCTGATAAGACGCGCAAGCGTCGCATCAG                                                                                                      >  1:3072781/1‑100    TGAATGTTAAACGCCCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGGTTTGTAACCTGTAGACCTGATAAGACGCGCAAGCGTCGCATCAGG                                                                                                     <  2:2293349/100‑1                                                                 ACCTGTAGACCTGATAAGACGCGCAAGCGTCGCATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTT                                        >  2:167932/1‑100                                                                  CCTGTAGACCTGATAAGACGCGCAAGCGTCGCATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTT                                       >  1:2735263/1‑100                                                                  CCTGTAGACCTGATAAGACGCGCAAGCGTCGCATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCAGGCGTTT                                       >  1:1693709/1‑100                                                                       AGACCTGATAAGACGCGCAAGCGTCGCATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACAT                                  >  1:2434347/1‑100                                                                        GACCTGATAAGACGCGCAAGCGTCGCATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATT                                 >  2:2433128/1‑100                                                                        GACCTGATAAGACGCGCAAGCGTCGCATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGAGGGAAGCGCCTCCGGGCGTTTAACATT                                 >  1:2470010/1‑100                                                                         ACCTGATAAGACGCGCAAGCGTCGCATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTC                                >  2:2269113/1‑100                                                                          CCTGATAAGACGCGCAAGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCA                               >  2:2522141/1‑100                                                                          CCTGATAAGACGCGCAAGCGTCGCATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCA                               >  2:619469/1‑100                                                                          CCTGATAAGACGCGCAAGCGTCGCATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCA                               >  1:1398310/1‑100                                                                            TGATAAGACGCGCAAGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACT                             >  2:272617/1‑100                                                                            TGATAAGACGCGCAAGCGTCGCATCAGGTCTACAGGTTACAACCCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACT                             >  1:179360/1‑100                                                                            TGATAAGACGCGCAAGCGTCGCATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCAGGGCGTTTAACATTCACT                             >  2:2056719/1‑100                                                                                                 tatgAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTTGTG        <  1:407647/96‑1                                                                                                  ATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTTGTGC       >  1:1201338/1‑100                                                                                                  ATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGATTAACATTCACTCAACCTATCAGGCGCTTTGTGC       >  1:1992708/1‑100                                                                                                    CAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTTGTGCGA     >  2:3763185/1‑100                                                                                                    CAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTTGTGCGA     <  2:2999613/100‑1                                                                                                    CAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTTGTGCGA     >  2:888320/1‑100                                                                                                    CAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTTGTGCGA     >  1:503363/1‑100                                                                                                     AGGTCTACAGGTTACCAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTTGTGCGAG    <  2:3738060/100‑1                                                                                                     AGGTCTACAGGTTACCAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTTGTGCGAG    <  2:3743963/100‑1                                                                                                     AGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTTGTGCGAG    <  2:3526968/100‑1                                                                                                     AGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTTGTGCGAG    <  2:820631/100‑1                                                                                                     AGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCACGGATCGCGGGAGGCGCCTCCGGGCGTTAAACATTCACTCAACCTATGAGGGGCTTTGTGCGAG    >  1:1708054/1‑100                                                                                                     AGGGCTACAGGTTACAAGCCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTTGTGC       <  1:3062625/97‑1                                                                                                      GGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTTGTGCGAGA   >  2:2007762/1‑100                                                                                                       GTCTACAGGTTACGAACCTTGCCGTTAAAAAGACCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTTGTGCGAG    <  1:738729/98‑1                                                                                                       GTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTTGTGCGAGAG  <  2:1947733/100‑1                                                                                                       GTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTTGTGCGAGAG  >  2:295119/1‑100                                                                                                       GTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTTGTGCGAGAG  <  1:2795371/100‑1                                                                                                                                                                                                            GAGTGAATGTTAAACGCCCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGGTTTGTAACCTGTAGACCTGATAAGACGCGCAAGCGTCGCATCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2539710‑2539608 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTTGTGCGAGAG  >  NC_000913/2539638‑2539736

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.