BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2835118	NA (NA)	12 (0.090)	6/164	NT	NA	noncoding (52/82 nt)	REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences
*	?	NC_000913	= 4317999	NA (NA)	12 (0.090)	6/164	NT	NA	noncoding (83/83 nt)	REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 182 total aligned reads displayed.

GATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAAT  >  NC_000913/2835020‑2835217

 aTTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGgc                                                                                                   <  2:106231‑M1/100‑3 (MQ=255)

  ttgttgAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGgcc                                                                                                  >  2:3247586‑M1/1‑97 (MQ=255)

    gttgAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGgccgg                                                                                                >  2:3186395‑M1/1‑95 (MQ=255)

       gAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGAGGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGgctgggta                                                                                             >  2:943976‑M1/1‑92 (MQ=255)

         aaaCATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAg                                                                                           <  2:579610/100‑1 (MQ=255)

         aaaCATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAg                                                                                           <  2:52316/100‑1 (MQ=255)

          aaCATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAgg                                                                                          <  2:1820729/100‑1 (MQ=255)

           aCATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGc                                                                                         <  2:810053/100‑1 (MQ=255)

           aCATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGc                                                                                         <  2:2247107/100‑1 (MQ=255)

            cATTGCCGATGTAGGTGGGCTACTTTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCg                                                                                        <  2:937903/100‑1 (MQ=255)

            cATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCg                                                                                        <  2:3796564/100‑1 (MQ=255)

             aTTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCgn                                                                                       <  1:2530833/100‑2 (MQ=255)

               tGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGttt                                                                                     >  1:814628/1‑100 (MQ=255)

                gCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTa                                                                                    >  2:1916723/1‑100 (MQ=255)

                gCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGAAGCATGTGTAGGCCGGATAAGGCGTTTa                                                                                    >  2:976749/1‑100 (MQ=255)

                 ccgctatAGGTGGCCTAGCGTGCCTAATATGTCTGATCAGACGCTGGCGCGTCTTCTACTACCTACGGGGACGCATGTTTACGCCGGATAAGGcc                                                                                        <  1:2661635/89‑2 (MQ=255)

                 ccGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTAc                                                                                   >  2:3343608/1‑100 (MQ=255)

                 ccGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTAc                                                                                   <  1:83445/100‑1 (MQ=255)

                  cGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTAcg                                                                                  >  1:1611434/1‑100 (MQ=255)

                   gATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTAcgc                                                                                 <  2:2806484/100‑1 (MQ=255)

                   gATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGCGTAGGCCGGATAAGGCGCTTAcg                                                                                  >  1:736659/1‑99 (MQ=255)

                    aTGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTAcgcc                                                                                <  2:3511899/100‑1 (MQ=255)

                    aTGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTAcgcc                                                                                <  2:434195/100‑1 (MQ=255)

                    aTGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTAcgcc                                                                                <  1:383173/100‑1 (MQ=255)

                      gTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTAcgccgc                                                                              <  2:169644/100‑1 (MQ=255)

                       tAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCa                                                                             <  2:481512/100‑1 (MQ=255)

                       tAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCa                                                                             >  1:1435448/1‑100 (MQ=255)

                       tAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCa                                                                             >  2:268794/1‑100 (MQ=255)

                         ggTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATc                                                                           >  2:689911/1‑100 (MQ=255)

                         ggTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATc                                                                           >  2:3268450/1‑100 (MQ=255)

                          gTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGgccggatgcggcgtaaacgccttatcc                                                                          <  2:3043469‑M1/100‑28 (MQ=255)

                          gTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATcc                                                                          >  2:1160563/1‑100 (MQ=255)

                           tGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCg                                                                         >  2:3146951/1‑100 (MQ=255)

                             gtcgactgtGGCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGgccggatgcggcgtaaacgccttatccggc                                                                       <  1:2309497‑M1/96‑31 (MQ=255)

                             ggCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGGc                                                                       >  1:1107043/1‑100 (MQ=255)

                              gCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGgccggatgcggcgtaaacgccttatccggcc                                                                      <  1:1170450‑M1/100‑32 (MQ=255)

                              gCTACTGGGCCTAAAATGTGGGAGGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGgccggatgcggcgtaaacgccttatccggc                                                                       <  1:298133‑M1/99‑31 (MQ=255)

                               cTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGgccggatgcggcgtaaacgccttatccggcct                                                                     <  1:3233710‑M1/100‑33 (MQ=255)

                               cTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGgccggatgcggcgtaaacgccttatccggcct                                                                     <  2:2613273‑M1/100‑33 (MQ=255)

                                 aCTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATg                                                                   <  2:71254/100‑1 (MQ=255)

                                  cTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATgg                                                                  <  2:2147176/100‑1 (MQ=255)

                                  cTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATgg                                                                  <  2:1667105/100‑1 (MQ=255)

                                   tgtgCCTACAATGGCGGATGCCACGCTGGAGCGTCTTATCCGCCATACGGGGACGCCTGTGTAGGCCGGATAAGGCTTTTACGCCGCATCCGGCAATgg                                                                  <  1:3113078/99‑1 (MQ=18)

                                      gCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTc                                                              >  1:644717/1‑100 (MQ=255)

                                       ccTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTcc                                                             >  2:3420589/1‑100 (MQ=255)

                                         tAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCaa                                                           >  1:3777230/1‑100 (MQ=255)

                                             aTGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGc                                                       <  2:2363530/100‑1 (MQ=255)

                                              tGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACCGGGACGCAGGTGTAGGCCGGATAAGGCGTTTACGGCGCATCCGGCAATGGTGTCCAAATGCa                                                      <  1:1372283/100‑1 (MQ=255)

                                               gTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCaa                                                     <  2:3075709/100‑1 (MQ=255)

                                               gTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCa                                                      >  2:3751524/1‑99 (MQ=255)

                                                tCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAac                                                    <  2:415204/100‑1 (MQ=255)

                                                tCGGATGCGACGCTGGCAAGTCTTATCCGACATACGGGGACGCATGTGTAGGCCGTATAAGGCGTTTACGCCTCATCCGGCAATGGTGTCCAAATGCAac                                                    >  1:548268/1‑100 (MQ=18)

                                                  ggATGCGACGCTGGCGCGTCTTATCCGACCTAAGGGGACGCATGTGTCGGCTGGATAAGGCGTTTACGGCGCATCCGGCAGTGGTGTCCAAATGCaaaa                                                   >  1:754664/1‑97 (MQ=18)

                                                      gCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGttt                                              <  2:372446/100‑1 (MQ=255)

                                                      gCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGttt                                              <  2:2522518/100‑1 (MQ=255)

                                                       cGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGtttt                                             <  1:3420564/100‑1 (MQ=255)

                                                       cGACGCTGGCGCGTCTTATCCGACCTAAGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCACCTCCGGCAATGGTGTCCAAATGCAACACAtt                                               >  1:1140262/1‑98 (MQ=21)

                                                        gACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTa                                            >  1:620019/1‑100 (MQ=255)

                                                         aCGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTAt                                           <  2:2742105/100‑1 (MQ=255)

                                                               gcgcGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTc                                     <  2:646346/100‑1 (MQ=255)

                                                               gcgcGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTc                                     >  1:2698801/1‑100 (MQ=255)

                                                                 gcgTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTg                                   <  2:140699/100‑1 (MQ=255)

                                                                  cgTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTgg                                  >  1:202365/1‑100 (MQ=255)

                                                                  cgTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTgg                                  <  2:2985685/100‑1 (MQ=255)

                                                                  cgTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTgg                                  <  1:230492/100‑1 (MQ=255)

                                                                    tCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGAc                                >  2:845868/1‑100 (MQ=255)

                                                                    tCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGAc                                >  2:1289836/1‑100 (MQ=255)

                                                                    tCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGAc                                <  1:268791/100‑1 (MQ=255)

                                                                     cTTATCCGACCTATGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACt                               <  1:2731625/100‑1 (MQ=255)

                                                                     cTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACt                               <  2:271892/100‑1 (MQ=255)

                                                                     cTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACt                               <  1:1285344/100‑1 (MQ=255)

                                                                       tATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTc                             >  2:1523268/1‑100 (MQ=255)

                                                                         tCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCAc                           >  2:2380549/1‑100 (MQ=255)

                                                                         tCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCAc                           >  1:2177068/1‑100 (MQ=255)

                                                                          ccGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCAcc                          >  2:774302/1‑100 (MQ=255)

                                                                              ccTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCt                      >  2:2192800/1‑100 (MQ=255)

                                                                              ccTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCt                      <  2:2000899/100‑1 (MQ=255)

                                                                              ccTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATACGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCg                        >  1:3671320/1‑98 (MQ=255)

                                                                                tACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTaa                    >  1:193490/1‑100 (MQ=255)

                                                                                tACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTaa                    >  2:3458112/1‑100 (MQ=255)

                                                                                  cGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAAcc                  <  2:103446/100‑1 (MQ=255)

                                                                                  cGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAAcc                  <  1:199849/100‑1 (MQ=255)

                                                                                  cGGAGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAAcc                  <  1:2606712/100‑1 (MQ=255)

                                                                                   ggggACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCa                 <  2:2268451/100‑1 (MQ=255)

                                                                                    gggACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCa                 >  1:3391488/1‑99 (MQ=255)

                                                                                        cGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAAcgcg            >  2:2871095/1‑100 (MQ=255)

                                                                                          cATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGcgcc          >  1:3001427/1‑100 (MQ=255)

                                                                                          cATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGcgcc          >  1:3559271/1‑100 (MQ=255)

                                                                                          cATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGcgcc          <  1:1411709/100‑1 (MQ=255)

                                                                                          cATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGcgcc          >  2:2063979/1‑100 (MQ=255)

                                                                                            tgtgTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCTATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGcgccgc        >  1:2036804/1‑100 (MQ=255)

                                                                                            tgtgTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGcgccgc        >  2:1285621/1‑100 (MQ=255)

                                                                                            tgtgTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGcgccgc        >  1:2969756/1‑100 (MQ=255)

                                                                                              tgtAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCgcag      <  2:270292/100‑1 (MQ=255)

                                                                                               gtAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCgcagc     >  1:898824/1‑100 (MQ=255)

                                                                                                tAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCgcagca    >  2:2658455/1‑100 (MQ=255)

                                                                                                tAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCgcagca    <  2:2148392/100‑1 (MQ=255)

                                                                                                naGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCgcagca    >  1:106403/2‑100 (MQ=255)

                                                                                                 aGgccggataaggcgtttacgccgcatccggcctacaaatgcgctccccgtaggtcggataagacgcgtcagcgtcgcatccgacacccgaaccacgagg   >  2:1935365‑M1/1‑2 (MQ=255)

                                                                                                  ggCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAAt  >  2:139821/1‑100 (MQ=255)

GATTGTTGAAAACATTGCCGATGTAGGTGGGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAAT  >  NC_000913/2835020‑2835217

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.