New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 762891NA (NA)4 (0.030) 4/164 NT NA noncoding (130/167 nt) REP68 (repetitive extragenic palindromic) element; contains 4 REP sequences REP68 (repetitive extragenic palindromic) element; contains 4 REP sequences
?NC_000913 = 762924 NA (NA)noncoding (163/167 nt) REP68 (repetitive extragenic palindromic) element; contains 4 REP sequences REP68 (repetitive extragenic palindromic) element; contains 4 REP sequences

Only 100 of 148 total aligned reads displayed.

CGGCAATTGAAGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAACG  >  NC_000913/762792‑762989
                                                                                                       |                                                                                                  
cGGCAATTGAAGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGAt                                                                                                    >  1:1274774/1‑100 (MQ=255)
cGGCAATTGAAGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGAt                                                                                                    <  2:2066678/100‑1 (MQ=255)
 ggCAATTGAAGCCTGATGCGACGCTGACGCGTCTTATAAGGCCTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATg                                                                                                   >  1:2027138‑M1/1‑99 (MQ=255)
   cAATTGAAGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATgcc                                                                                                 <  2:1854875‑M1/100‑4 (MQ=255)
   cAATTGAAGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATgcc                                                                                                 <  1:377587‑M1/100‑4 (MQ=255)
   cAATTGAAGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATgcc                                                                                                 <  2:3686570‑M1/100‑4 (MQ=255)
     aTTGAAGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATgcctg                                                                                               >  1:3109531‑M1/1‑95 (MQ=255)
       tGAAGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATgcctgat                                                                                             <  1:515143‑M1/100‑8 (MQ=255)
       tGAAGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATgcctgat                                                                                             <  2:367463‑M1/100‑8 (MQ=255)
        gAAGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGAtg                                                                                            >  1:2525401/1‑100 (MQ=255)
         aaGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGAtgt                                                                                           <  1:3792266/100‑1 (MQ=255)
           gCCTGATGCGACGCTGACGCGTCTTATCAGGCCTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGa                                                                                         >  1:1517826/1‑100 (MQ=255)
            ccTGATGCGACGCTGACGCGTCTTATCAGGCCTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGAc                                                                                        <  1:155643/100‑1 (MQ=255)
            ccTGATGCGACGCTGACGCGTCTTATCAGGCCTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGAc                                                                                        >  2:2277304/1‑100 (MQ=255)
               gATGCGACGCTGACGCGTCTTATCAGGCCTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGtt                                                                                     <  2:3482803/100‑1 (MQ=255)
                    gACGCTGACGCGTCTTATCAGGCCTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCTCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACg                                                                                >  1:802407/1‑100 (MQ=255)
                    gACGCTGACGCGTCTTATCAGGCCTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGTTGTGACGTTTAACg                                                                                >  1:2585870/1‑100 (MQ=255)
                    gACGCTGACGCGTCTTATCAGGCCTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACg                                                                                >  2:2603804/1‑100 (MQ=255)
                           aCGCGTCTTATCAGGCCTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCtt                                                                          <  2:3548080/99‑1 (MQ=255)
                           aCGCGTCTTATCAGGCCTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTA                                                                         >  2:2824052‑M2/1‑100 (MQ=255)
                            cgcgTCTTATCAGGCCTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTAT                                                                        <  2:767953‑M2/100‑1 (MQ=255)
                             gggtcTTATCAGGCCTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATC                                                                       >  1:1013986‑M2/3‑100 (MQ=255)
                             gcgACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGACGCCTGCTGAGACAttgtcgcaa                                                                              >  1:2123863/1‑90 (MQ=11)
                              cgTCTTATCAGGCCTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCA                                                                      <  2:2482650‑M2/100‑1 (MQ=255)
                              cgTCTTATCAGGCCTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCA                                                                      >  1:801946‑M2/1‑100 (MQ=255)
                                tCTTATCAGGCCTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGG                                                                    >  2:3547939‑M2/1‑100 (MQ=255)
                                 cTTATCAGGCCTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGC                                                                   >  2:658427‑M2/1‑100 (MQ=255)
                                   tATCAGGCCTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCt                                                                 >  2:2828317/1‑100 (MQ=255)
                                   tATCAGGCCTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCt                                                                 >  1:1518053/1‑100 (MQ=255)
                                    aTCAGGCCTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATgcctgataagacacgttaaacgtcacatcaggcatc                                                                <  1:2623452‑M1/100‑37 (MQ=255)
                                    aTCAGGCCTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTa                                                                >  1:2163336/1‑100 (MQ=255)
                                     tCAGGCCTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATgcctgataagacacgttaaacgtcacatcaggcatcg                                                               <  1:1467592‑M1/100‑38 (MQ=255)
                                     tCAGGCCTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTa                                                                >  1:55584/1‑99 (MQ=255)
                                      ccggCCTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACg                                                              <  2:3027260/98‑1 (MQ=255)
                                      cAGGCCTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATgcctgataagacacgttaaacgtcacatcaggcatcgc                                                              <  2:3135146‑M1/100‑39 (MQ=255)
                                      cAGGCCTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACg                                                              >  1:2694142/1‑100 (MQ=255)
                                      cAGGCCTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACg                                                              >  2:702044/1‑100 (MQ=255)
                                        ggCCTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACggg                                                            <  2:3269512/100‑1 (MQ=255)
                                        ggCCTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACggg                                                            <  1:1252626/100‑1 (MQ=255)
                                        ggCCTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACggg                                                            <  2:3410931/100‑1 (MQ=255)
                                          ccTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGtgtg                                                          <  1:2052187/100‑1 (MQ=255)
                                           cTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACggg                                                            >  1:2296045/1‑97 (MQ=255)
                                            tAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGAc                                                        <  2:383225/100‑1 (MQ=255)
                                                 ggACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGAc                                                    >  2:2136681/1‑100 (MQ=255)
                                                 ggACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGAc                                                    >  2:588608/1‑100 (MQ=255)
                                                 ggACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGAc                                                    <  1:3572012/100‑1 (MQ=255)
                                                 ggACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGAc                                                    <  2:2002515/100‑1 (MQ=255)
                                                     cac‑caA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACACGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATg                                                >  1:1045042/1‑100 (MQ=255)
                                                     cac‑caA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAAtn                                                <  2:2278708/100‑2 (MQ=255)
                                                      ac‑caG‑TGGAGGTCGGACAAGGCTCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTGAACTTTTCTTATCAGGCCTACGGGTGACCGACaa                                                  <  1:108050/97‑1 (MQ=37)
                                                      ac‑caA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGc                                               >  1:1636781/1‑100 (MQ=255)
                                                      ac‑caA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCACCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCACGCCTACGGGTGACCGACAATg                                                >  1:1110256/1‑99 (MQ=255)
                                                      ac‑caA‑TGTAGGTCGGATAAGGCACA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGc                                               >  2:2632088/1‑100 (MQ=255)
                                                       c‑caA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATg                                                >  1:1145171/1‑98 (MQ=255)
                                                         caA‑TGTGGGTCGGATAAGGCGCA‑AGCGCGGCAGCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGccc                                             <  1:3342255/100‑1 (MQ=255)
                                                         caA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGccc                                             <  2:1469073/100‑1 (MQ=255)
                                                          aa‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCg                                            <  1:2584787/100‑1 (MQ=255)
                                                             tGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGTGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGa                                          >  1:2917676/1‑100 (MQ=255)
                                                               tAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAg                                        >  1:2198711/1‑100 (MQ=255)
                                                                 gttCGGATAAGACGCA‑CGCGCCGCATCCGACAAGCGTTGCCTGATGTGACGTTTAACGTGTCTGATCATGCCTACGCGTGACCGACAGTGCCCGGa                                          >  1:2496062/3‑96 (MQ=25)
                                                                 ggTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCg                                      <  2:2357659/100‑1 (MQ=255)
                                                                 ggTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCg                                      >  2:2361528/1‑100 (MQ=255)
                                                                 ggTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCg                                      >  2:2726205/1‑100 (MQ=255)
                                                                    cGGATAAGGCGCA‑AGCGCCGCATACGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATa                                   >  1:9732/1‑100 (MQ=255)
                                                                     ggATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATAc                                  <  1:2234781/100‑1 (MQ=255)
                                                                      gATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACg                                 <  1:1689142/100‑1 (MQ=255)
                                                                      gATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACg                                 <  2:3212598/100‑1 (MQ=255)
                                                                      gATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACg                                 >  1:3244730/1‑100 (MQ=255)
                                                                       aTAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGa                                <  2:1647898/100‑1 (MQ=255)
                                                                       aTAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGa                                >  1:2782715/1‑100 (MQ=255)
                                                                         aaGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGaaa                              <  1:3594276/100‑1 (MQ=255)
                                                                         aaGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGaaa                              <  1:336966/100‑1 (MQ=255)
                                                                          aGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAat                             <  2:2956267/100‑1 (MQ=255)
                                                                          aGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAat                             <  2:853489/100‑1 (MQ=255)
                                                                          aGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAat                             >  1:649801/1‑100 (MQ=255)
                                                                          aGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAat                             >  2:1183336/1‑100 (MQ=255)
                                                                          aGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAat                             <  2:1200266/100‑1 (MQ=255)
                                                                            gcgcA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAatat                           <  1:1746055/100‑1 (MQ=255)
                                                                             cgcA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATAtt                          >  2:2782137/1‑100 (MQ=255)
                                                                             cgcA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTAAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAatat                           >  1:2075981/1‑99 (MQ=255)
                                                                               cA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCg                        <  2:2653626/100‑1 (MQ=255)
                                                                                a‑aGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCgg                       <  1:2378915/100‑1 (MQ=255)
                                                                                     gccgcATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTCCGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTa                   >  2:1880317/1‑100 (MQ=255)
                                                                                     gccgcATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTa                   >  2:942534/1‑100 (MQ=255)
                                                                                       cgcATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACg                 <  1:2841006/100‑1 (MQ=255)
                                                                                        gcATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACgg                >  1:885470/1‑100 (MQ=255)
                                                                                           tCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGttt             >  1:3473165/1‑100 (MQ=255)
                                                                                           tCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGttt             <  1:2307726/100‑1 (MQ=255)
                                                                                             cGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTaa           >  1:3027627/1‑100 (MQ=255)
                                                                                               aCAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTaaaa         <  2:3109551/100‑1 (MQ=255)
                                                                                               aCAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTaaaa         <  1:1989891/100‑1 (MQ=255)
                                                                                               aCAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTaaaa         <  2:2324790/100‑1 (MQ=255)
                                                                                                cAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAg        <  1:3466093/100‑1 (MQ=255)
                                                                                                  aGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCatcgcttgtcggatgcggcgcttgcgccttatccgacctacattggtggtcccgtaggcc       <  1:2643003‑M2/99‑61 (MQ=255)
                                                                                                    cGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCatcgcttgtcggatgcggcgcttgcgccttatccgacctacattggtggtcccgtaggcctga    <  1:1467592‑M2/100‑64 (MQ=255)
                                                                                                     gATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCatcgcttgtcggatgcggcgcttgcgccttatccgacctacattggtggtcccgtaggcctgat   <  1:2623452‑M2/100‑65 (MQ=255)
                                                                                                     gATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAAc   <  2:2303011/100‑1 (MQ=255)
                                                                                                      aTGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAACg  <  2:3710976/100‑1 (MQ=255)
                                                                                                      aTGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAACg  <  2:2093702/100‑1 (MQ=255)
                                                                                                      aTGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGATTAAAAGATAACg  <  2:2554254/100‑1 (MQ=255)
                                                                                                       |                                                                                                  
CGGCAATTGAAGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTAC‑GGGACCAC‑CAA‑TGTAGGTCGGATAAGGCGCA‑AGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAACG  >  NC_000913/762792‑762989

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.