New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 762891NA (NA)4 (0.030) 4/164 NT NA noncoding (130/167 nt) REP68 (repetitive extragenic palindromic) element; contains 4 REP sequences REP68 (repetitive extragenic palindromic) element; contains 4 REP sequences
?NC_000913 = 762924 NA (NA)noncoding (163/167 nt) REP68 (repetitive extragenic palindromic) element; contains 4 REP sequences REP68 (repetitive extragenic palindromic) element; contains 4 REP sequences

Only 100 of 168 total aligned reads displayed.

CTTATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAACGATTACTGAAGGATGGACAGAACACATGAACTTAC  >  NC_000913/762825‑763023
                                                                                                   |                                                                                                   
cTTATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGC                                                                                                     <  1:846728‑M2/100‑1 (MQ=255)
cTTATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGC                                                                                                     >  2:658427‑M2/1‑100 (MQ=255)
  tATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCt                                                                                                   >  1:1518053/1‑100 (MQ=255)
   aTCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTa                                                                                                  >  1:506010/1‑100 (MQ=255)
   aTCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTa                                                                                                  >  1:2163336/1‑100 (MQ=255)
     ccggCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACg                                                                                                <  2:3027260/98‑1 (MQ=255)
     cAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACg                                                                                                >  1:2694142/1‑100 (MQ=255)
       ggCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACggg                                                                                              <  2:3269512/100‑1 (MQ=255)
           tACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGAc                                                                                          <  2:383225/100‑1 (MQ=255)
            aCGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGAcc                                                                                         <  1:614764/100‑1 (MQ=255)
            aCGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGAcc                                                                                         <  2:2641806/100‑1 (MQ=255)
             cGGGACCCCCAATGTAGGTCGCATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGCTTAACGTGTCTTATAACGCCTACGGATGACCg                                                                                        >  1:3382504/1‑100 (MQ=38)
             cGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCg                                                                                        >  2:308085/1‑100 (MQ=255)
              gggACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGa                                                                                       <  1:1849768/100‑1 (MQ=255)
               ggACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGAc                                                                                      >  2:2136681/1‑100 (MQ=255)
               ggACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGAc                                                                                      <  2:2002515/100‑1 (MQ=255)
               ggACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGAc                                                                                      <  1:3572012/100‑1 (MQ=255)
                  ccaccaATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAAt                                                                                   >  1:3272514/1‑100 (MQ=255)
                   caccaATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACACGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATg                                                                                  >  1:1045042/1‑100 (MQ=255)
                   caccaATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAAtn                                                                                  <  2:2278708/100‑2 (MQ=255)
                    accaATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGc                                                                                 >  1:1636781/1‑100 (MQ=255)
                    accaATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGc                                                                                 <  1:2775684/100‑1 (MQ=255)
                    accaATGTAGGTCGGATAAGGCACAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGc                                                                                 >  2:2632088/1‑100 (MQ=255)
                     ccaATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATg                                                                                  >  1:1145171/1‑98 (MQ=255)
                     ccaATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGcc                                                                                >  1:1191041/1‑100 (MQ=255)
                       aaTGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCg                                                                              <  1:2584787/100‑1 (MQ=255)
                             gttCGGATAAGACGCACGCGCCGCATCCGACAAGCGTTGCCTGATGTGACGTTTAACGTGTCTGATCATGCCTACGCGTGACCGACAGTGCCCGGa                                                                            >  1:2496062/3‑96 (MQ=25)
                             ggTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCg                                                                        >  1:1091890/1‑100 (MQ=255)
                             ggTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCg                                                                        >  2:2726205/1‑100 (MQ=255)
                             ggTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCg                                                                        >  2:2361528/1‑100 (MQ=255)
                                 ggATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATAc                                                                    <  1:2234781/100‑1 (MQ=255)
                                  gATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACg                                                                   <  2:3212598/100‑1 (MQ=255)
                                  gATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACg                                                                   <  1:1689142/100‑1 (MQ=255)
                                     aaGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGaaa                                                                <  1:336966/100‑1 (MQ=255)
                                      aGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAat                                                               <  2:1200266/100‑1 (MQ=255)
                                      aGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAat                                                               <  2:853489/100‑1 (MQ=255)
                                        gcgcAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAatat                                                             <  1:1746055/100‑1 (MQ=255)
                                         cgcAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATAtt                                                            >  2:2782137/1‑100 (MQ=255)
                                         cgcAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTAAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAatat                                                             >  1:2075981/1‑99 (MQ=255)
                                          gcAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTc                                                           <  2:2343116/100‑1 (MQ=255)
                                            aaGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCgg                                                         <  2:817784/100‑1 (MQ=255)
                                            aaGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCgg                                                         <  1:2378915/100‑1 (MQ=255)
                                              gcgcCGCATCCTACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGTCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTc                                                       <  2:2832365/100‑1 (MQ=255)
                                                gccgcATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTCCGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTa                                                     >  2:1880317/1‑100 (MQ=255)
                                                gccgcATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTa                                                     >  2:1666572/1‑100 (MQ=255)
                                                  cgcATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACg                                                   <  2:1091895/100‑1 (MQ=255)
                                                  cgcATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACg                                                   <  1:2841006/100‑1 (MQ=255)
                                                     aTCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATAGTCGGTCTACgg                                                  <  1:2912786/98‑1 (MQ=255)
                                                      tCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGttt                                               >  1:3473165/1‑100 (MQ=255)
                                                        cGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTaa                                             >  1:3027627/1‑100 (MQ=255)
                                                          aCAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTaaaa                                           <  2:3109551/100‑1 (MQ=255)
                                                           cAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAg                                          <  1:1343155/100‑1 (MQ=255)
                                                             aGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCatcgcttgtcggatgcggcgcttgcgccttatccgacctacattggtggtcccgtaggcc                                         <  1:2643003‑M2/99‑61 (MQ=255)
                                                             aGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCAGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGAt                                        <  1:2237163/100‑1 (MQ=255)
                                                              gCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGCAATATTCGGTCTACGGTTTAAAAGATa                                       >  1:2351535/1‑100 (MQ=255)
                                                                gATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAAc                                     <  2:2303011/100‑1 (MQ=255)
                                                                 aTGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAACg                                    <  2:3710976/100‑1 (MQ=255)
                                                                 aTGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGATTAAAAGATAACg                                    <  2:2554254/100‑1 (MQ=255)
                                                                    ccTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGATAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAACGAtt                                 >  1:2098124/1‑100 (MQ=255)
                                                                    ccTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAACGAtt                                 >  1:965174/1‑100 (MQ=255)
                                                                     cTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAACGATTa                                >  2:3421522/1‑100 (MQ=255)
                                                                     cTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAACGATTa                                >  2:3602109/1‑100 (MQ=255)
                                                                     cTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAACGATTa                                >  2:1514349/1‑100 (MQ=255)
                                                                      tGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAACGATTAc                               >  2:1466517/1‑100 (MQ=255)
                                                                      tGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAACGATTAc                               <  2:1343632/100‑1 (MQ=255)
                                                                       gATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAATGATTACt                              >  2:3320557/1‑100 (MQ=255)
                                                                        aTGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAACGATTACTg                             <  1:308083/100‑1 (MQ=255)
                                                                           tgACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAACGATTACTGAAg                          <  1:346524/100‑1 (MQ=255)
                                                                            gACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAACGATTACTGAAgg                         >  2:2099287/1‑100 (MQ=255)
                                                                            gACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAACGATTACTGAAgg                         <  2:683805/100‑1 (MQ=255)
                                                                              cGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAACGATTACTGAAGGAt                       >  2:748749/1‑100 (MQ=255)
                                                                                 ttAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAACGATTACTGAAGGATGGa                    <  1:3090888/100‑1 (MQ=255)
                                                                                  tAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAACGATTACTGAAGGATGGAc                   <  2:2198720/100‑1 (MQ=255)
                                                                                  tAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAACGATTACTGAAGGATGGAc                   >  2:1512514/1‑100 (MQ=255)
                                                                                   aaCTTGTCATATCAGGCCTACGGGTGACGGACAATGCCCGGTATCGAGGCGACATACTCGGTACACGGTTGAAATTATCAGGCTTACTGATGGGTGGaaa                  >  1:896417/1‑98 (MQ=255)
                                                                                    aCGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAACGATTACTGAAGGATGGACAg                 <  1:230756/100‑1 (MQ=255)
                                                                                     cGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAACGATTACTGAAGGATGGACAGa                >  2:1116412/1‑100 (MQ=255)
                                                                                      gtgtCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAACGATTACTGAAGGATGGACAGaa               >  2:2370410/1‑100 (MQ=255)
                                                                                      gtgtCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAACGATTACTGAAGGATGGACAGaa               <  1:748744/100‑1 (MQ=255)
                                                                                       tgtCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAACGATTACTGAAGGATGGACAGAac              >  1:3005494/1‑100 (MQ=255)
                                                                                       tgtCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAACGATTACTGAAGGATGGACAGAac              <  2:402503/100‑1 (MQ=255)
                                                                                        gtCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAACGATTACTGAAGGATGGACAGAaca             >  2:547341/1‑100 (MQ=255)
                                                                                        gtCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAACGATTACTGAAGGATGGACAGAaca             >  1:187441/1‑100 (MQ=255)
                                                                                          cTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAACGATTACTGAAGGATGGACAGAAcaca           <  2:2931811/100‑1 (MQ=255)
                                                                                             aTCAGGCatcgcttgtcggatgcggcgcttgcgccttatccgacctacattggtggtcccgtaggcctgataagacgcgtcagcgtcgcatcaggcttca        <  2:367463‑M2/100‑94 (MQ=255)
                                                                                             aTCAGGCatcgcttgtcggatgcggcgcttgcgccttatccgacctacattggtggtcccgtaggcctgataagacgcgtcagcgtcgcatcaggcttca        <  1:1509866‑M2/100‑94 (MQ=255)
                                                                                             aTCAGGCatcgcttgtcggatgcggcgcttgcgccttatccgacctacattggtggtcccgtaggcctgataagacgcgtcagcgtcgcatcaggcttca        <  1:515143‑M2/100‑94 (MQ=255)
                                                                                              tCAGGCatcgcttgtcggatgcggcgcttgcgccttatccgacctacattggtggtcccgtaggcctaataagacgcgtcaacgtcgcatcaggcct          <  1:3759710‑M2/97‑92 (MQ=255)
                                                                                               cAGGCatcgcttgtcggatgcggcgcttgcgccttatccgacctacattggtggtcccgtaggcctgataagacgcgtcagcgtcgcatcaggcttcaat      >  1:3109531‑M2/1‑5 (MQ=255)
                                                                                               cAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAACGATTACTGAAGGATGGACAGAACACATGAAc      <  2:2988557/100‑1 (MQ=255)
                                                                                               cAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAACGATTACTGAAGGATGGACAGAACACATGAAc      <  2:669562/100‑1 (MQ=255)
                                                                                               cAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAACGATTACTGAAGGATGGACAGAACACATGAAc      >  1:1970889/1‑100 (MQ=255)
                                                                                                aGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAACGATTACTGAAGGATGGACAGAACACATGAACt     >  2:942657/1‑100 (MQ=255)
                                                                                                 ggCatcgcttgtcggatgcggcgcttgcgccttatccgacctacattggtggtcccgtaggcctgataagacgcgtcagcgtcgcatcaggcttcaattg    <  2:3686570‑M2/100‑98 (MQ=255)
                                                                                                 ggCatcgcttgtcggatgcggcgcttgcgccttatccgacctacattggtggtcccgtaggcctgataagacgcgtcagcgtcgcatcaggcttcaattg    <  2:1854875‑M2/100‑98 (MQ=255)
                                                                                                 ggCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAACGATTACTGAAGGATGGACAGAACACATGAACtt    >  2:1303168/1‑100 (MQ=255)
                                                                                                 ggCCTACGGGGGACCGACAATGTGCGGAAGTGATACGATATATTCGGTCTACGGTTTAAAAGATAACGATTACTGAAGGATGGACAGAACAAATGAACt     <  1:1007519/99‑1 (MQ=255)
                                                                                                   ccTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAACGATTACTGAAGGATGGACAGAACACATGAACTTAc  >  2:3433834/1‑100 (MQ=255)
                                                                                                   ccTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAACGATTACTGAAGGATGGACAGAACACATGAACTTAc  <  1:2828300/100‑1 (MQ=255)
                                                                                                   catcgcttgtcggatgcggcgcttgcgccttatccgacctacattggtggtcccgtaggccttataagacgcgtcagcgtcgcatcaggcttcaattgcc  >  1:2027138‑M2/1‑1 (MQ=255)
                                                                                                   |                                                                                                   
CTTATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAACGATTACTGAAGGATGGACAGAACACATGAACTTAC  >  NC_000913/762825‑763023

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.