BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	39151 =	NA (NA)	9 (0.070)	6/164	NT	NA	noncoding (1/82 nt)	REP4 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP4 (repetitive extragenic palindromic) element; contains 2 REP sequences
*	?	NC_000913	39181 =	NA (NA)	9 (0.070)	6/164	NT	NA	noncoding (31/82 nt)	REP4 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP4 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 216 total aligned reads displayed.

ACGGCCCGAATTTCGGCATGGGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCG  >  NC_000913/39082‑39278

aCGGCCCGAATTTCGGCATGGGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGcc                                                                                                   <  1:1366765/100‑1 (MQ=255)

 gctaagtccgtgcgctgcctgatgcgacgctgatgcgtcttatcaggcctacgggagcacgaatgtagGCCGGATGCGGCGTAAACGCTTTATCCGGCCt                                                                                                  >  1:1340180‑M1/69‑100 (MQ=255)

  ggCCCGAATTTCGGCATGGGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTa                                                                                                 <  2:3194885/100‑1 (MQ=255)

  ggCCCGAATTTCGGCATGGGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTa                                                                                                 >  1:3536250/1‑100 (MQ=255)

   gCCCGAATTTCGGCATGGGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTAc                                                                                                >  2:617084/1‑100 (MQ=255)

    cccGAATTTCGGCATGGGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACa                                                                                               >  2:2024385/1‑100 (MQ=255)

      cGAATTTCGGCATGGGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACAtt                                                                                             >  1:2528320/1‑100 (MQ=255)

        ccgtgcgctgcctgatgcgacgctgatgcgtcttatcaggcctacgggagcacgaatgtagGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCg                                                                                           >  2:3462626‑M1/62‑100 (MQ=255)

        aaTTTCGGCATGGGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCg                                                                                           <  1:2003224/100‑1 (MQ=255)

        aaTTTCGGCATGGGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCg                                                                                           <  2:1449842/100‑1 (MQ=255)

         atttgtgCATGGGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGt                                                                                          <  1:3001592/94‑1 (MQ=255)

          tttCGGCATGGGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTg                                                                                         <  2:508354/100‑1 (MQ=255)

           ttCGGCATGGGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGc                                                                                        <  2:1457266/100‑1 (MQ=255)

           ttCGGCATGGGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGc                                                                                        <  2:3006907/100‑1 (MQ=255)

              ggCATGGGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTcc                                                                                     <  2:78359/100‑1 (MQ=255)

               gCATGGGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTccc                                                                                    <  2:3328135/100‑1 (MQ=255)

               gCATGGGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCCGCGTACACGCTTTATCCGGCCTACCTTCGTGCTccc                                                                                    >  1:2077133/1‑100 (MQ=255)

                  tGGGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTa                                                                                 <  1:17912/100‑1 (MQ=255)

                  tGGGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTa                                                                                 <  1:2837609/100‑1 (MQ=255)

                  tGGGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAACGCATCACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTa                                                                                 <  1:315042/100‑1 (MQ=255)

                    ggTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAgg                                                                               <  2:1531032/100‑1 (MQ=255)

                     gTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGc                                                                              >  2:1249249/1‑100 (MQ=255)

                      tAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGcc                                                                             <  1:2721147/100‑1 (MQ=255)

                      tAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGcc                                                                             >  1:2297359/1‑100 (MQ=255)

                      tAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGcc                                                                             <  1:32828/100‑1 (MQ=255)

                        gatgatCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCt                                                                            >  1:1580772/1‑99 (MQ=255)

                        gatgatCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTg                                                                           >  2:2705436/1‑100 (MQ=255)

                         atgatCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGa                                                                          >  1:1360968/1‑100 (MQ=255)

                         atgatCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGa                                                                          <  2:2754206/100‑1 (MQ=255)

                          tgatCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGAt                                                                         <  2:1636270/100‑1 (MQ=255)

                          tgatCAACTATATGCTCCTGAAAATATTATGTAGCGCATGACTCCCGGATGCGGAATAAAAGCTTTAACCGGCCTACCTTCATGCTCCCGTAAACCTGAt                                                                         <  1:2460282/100‑1 (MQ=255)

                           gatCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATa                                                                        >  1:1029930/1‑100 (MQ=255)

                           gatCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATa                                                                        >  1:1903635/1‑100 (MQ=255)

                            atCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTGGGCCTGATa                                                                        >  2:3118447/1‑99 (MQ=255)

                            atCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATaa                                                                       <  2:3790780/100‑1 (MQ=255)

                            atCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATaa                                                                       >  1:684029/1‑100 (MQ=255)

                            atCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATaa                                                                       <  1:1936186/100‑1 (MQ=255)

                            atCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATaa                                                                       >  2:3353634/1‑100 (MQ=255)

                             tCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAg                                                                      <  2:1942572/100‑1 (MQ=255)

                              ccATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGa                                                                     >  2:3777330/1‑100 (MQ=255)

                              ccATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGa                                                                     >  2:807125/1‑100 (MQ=255)

                               cATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGAc                                                                    <  1:3057240/100‑1 (MQ=255)

                                 ttattTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGCATGCGGCGTAAACGCTTTATCCTGCCTACATTCGTGCTCCCGTAGGCCTGATAAGa                                                                     <  1:3221215/97‑1 (MQ=255)

                                  tattTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCa                                                                 >  1:610951/1‑100 (MQ=255)

                                   attTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCAt                                                                >  2:2630496/1‑100 (MQ=255)

                                      tGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAg                                                             <  2:2801518/100‑1 (MQ=255)

                                        cTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCg                                                           <  2:2523760/100‑1 (MQ=255)

                                          ccTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTc                                                         <  1:1097951/100‑1 (MQ=255)

                                          ccTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTc                                                         >  1:3652183/1‑100 (MQ=255)

                                           cTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCg                                                        >  2:2215148/1‑100 (MQ=255)

                                           cTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCg                                                        >  2:2838006/1‑100 (MQ=255)

                                           cTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTACGCCTGATAAGACGCATCAGCGTCg                                                        >  1:1665724/1‑100 (MQ=255)

                                            tGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGc                                                       <  2:1548454/100‑1 (MQ=255)

                                             gAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCa                                                      >  1:2236491/1‑100 (MQ=255)

                                              aaaaaTTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCAt                                                     >  2:3146682/1‑100 (MQ=255)

                                               aaaaTTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTGCCGTAGGCCTGATAAGACGCATCAGCGTCGCAt                                                     >  1:3612349/1‑99 (MQ=255)

                                               aaaaTTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATc                                                    <  2:91088/100‑1 (MQ=255)

                                                aaaTTTATGTAGCGCATGACTGCTGGATGCGGCGTAATCGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATc                                                    <  1:2929162/99‑1 (MQ=255)

                                                   tttATGTATCGCATGAATGCTGGAGGCTGCGTAAACGCTTTAGCCGGTCTACATCCGTGCTCCCGGAGGCCTGATAGTACGCAGCAGCGTCGCATCAGGc                                                <  1:775556/100‑1 (MQ=21)

                                                        gTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAgcgc                                           >  2:3613901/1‑100 (MQ=255)

                                                         tAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCa                                          <  2:2149858/100‑1 (MQ=255)

                                                         tAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCa                                          <  2:651994/100‑1 (MQ=255)

                                                         tAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATACGGCCCACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAgcg                                            <  2:994414/98‑1 (MQ=255)

                                                          aGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCAc                                         >  2:873228/1‑100 (MQ=255)

                                                                tgtaggccggataaagcgtttacgccgcatccggcCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCacggcc                                     >  1:500815‑M2/36‑96 (MQ=255)

                                                                tGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACtt                                   >  1:828326/1‑100 (MQ=255)

                                                                tGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACtt                                   >  2:966534/1‑100 (MQ=255)

                                                                  taggccggataaagcgtttacgccgcatccggcCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTa                                  >  1:3363175‑M2/34‑99 (MQ=255)

                                                                  taggccggataaagcgtttacgccgcatccggcCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAg                                 >  2:1120341‑M2/34‑100 (MQ=255)

                                                                  taggccggataaagcgtttacgccgcatccggcCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAg                                 >  2:2115419‑M2/34‑100 (MQ=255)

                                                                    tGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCg                               <  1:1147903/100‑1 (MQ=255)

                                                                     GCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCTTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCgg                              >  1:3488996‑M1/1‑100 (MQ=255)

                                                                     GCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCgg                              <  1:572021‑M1/100‑1 (MQ=255)

                                                                     GCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCgg                              >  2:3245326‑M1/1‑100 (MQ=255)

                                                                        GGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTAt                           >  2:1698000‑M1/1‑100 (MQ=255)

                                                                          ATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTg                         >  2:1922843‑M1/1‑100 (MQ=255)

                                                                             cggcgTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCtt                      >  2:517815/1‑100 (MQ=255)

                                                                              ggcgTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTc                     >  1:127705/1‑100 (MQ=255)

                                                                              ggcgTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTc                     >  1:2386089/1‑100 (MQ=255)

                                                                               gcgTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCa                    >  2:1346602/1‑100 (MQ=255)

                                                                               gcgTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCa                    <  2:2874590/100‑1 (MQ=255)

                                                                               gcgTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCa                    <  1:3446741/100‑1 (MQ=255)

                                                                                 gTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGc                  >  2:2909696/1‑100 (MQ=255)

                                                                                 gTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGc                  <  2:2343276/100‑1 (MQ=255)

                                                                                  tAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGCTAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGc                  <  1:2422972/99‑1 (MQ=255)

                                                                                     aCGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCg              >  2:1009173/1‑100 (MQ=255)

                                                                                       gCTTTATCCGGCCTACGTTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGc             <  2:1782519/99‑1 (MQ=255)

                                                                                        cTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCAc           <  2:3629658/100‑1 (MQ=255)

                                                                                         tttATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACg          <  2:2190855/100‑1 (MQ=255)

                                                                                         tttATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTACCGGTATTGCTTCAGCACCGCACg          >  1:1465167/1‑100 (MQ=255)

                                                                                          ttATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACg          <  2:3483456/99‑1 (MQ=255)

                                                                                            atccggcCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGAcc       >  1:187929‑M2/8‑100 (MQ=255)

                                                                                             tccggcCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCCTCAGGCAGCGCACGCACTTACCGGTATTGCTTCAGCACCCCACCAccc      >  1:863524‑M2/7‑100 (MQ=255)

                                                                                             tccggcCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGAccc      <  1:2909678‑M2/94‑1 (MQ=255)

                                                                                             tccggcCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGAccc      >  2:353206‑M2/7‑100 (MQ=255)

                                                                                              ccggcCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCa     >  2:2825864‑M2/6‑100 (MQ=255)

                                                                                                ggcCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGc   <  1:418993‑M2/97‑1 (MQ=255)

                                                                                                ggcCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGc   >  2:1567622‑M2/4‑100 (MQ=255)

                                                                                                ggcCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGc   >  2:3447382‑M2/4‑100 (MQ=255)

                                                                                                 gcCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCg  <  1:2187881‑M2/98‑1 (MQ=255)

ACGGCCCGAATTTCGGCATGGGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCG  >  NC_000913/39082‑39278

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.