New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2393130NA (NA)6 (0.050) 6/164 NT NA intergenic (‑89/+75) nuoM/nuoL NADH:ubiquinone oxidoreductase, membrane subunit M/NADH:ubiquinone oxidoreductase, membrane subunit L
?NC_000913 = 2393162 NA (NA)noncoding (32/36 nt) REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 181 total aligned reads displayed.

AAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATGGATGC  >  NC_000913/2393063‑2393261
                                                                                                   |                                                                                                   
aaGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGAC                                                                                                     >  1:2658229‑M2/1‑100 (MQ=255)
  gTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGAccn                                                                                                   <  2:380035/100‑2 (MQ=255)
  gTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCt                                                                                                   >  2:1318599/1‑100 (MQ=255)
  gTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCt                                                                                                   <  2:3724212/100‑1 (MQ=255)
   tCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTa                                                                                                  <  1:446045/100‑1 (MQ=255)
     ccGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTa                                                                                                  <  1:1076841/98‑1 (MQ=255)
     ccGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACg                                                                                                <  1:1171599/100‑1 (MQ=255)
     ccGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACg                                                                                                <  2:3000815/100‑1 (MQ=255)
        tCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTc                                                                                             <  1:2349326/100‑1 (MQ=255)
          aGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCtt                                                                                           >  2:2004852/1‑100 (MQ=255)
           ggACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTta                                                                                          <  2:2373974/100‑1 (MQ=255)
           ggACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTta                                                                                          <  1:3087652/100‑1 (MQ=255)
           ggACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTta                                                                                          <  2:2249876/100‑1 (MQ=255)
            gACCGGATTTTCAACGACTTCTCAGGACAGTAAATTATCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTtat                                                                                         <  1:313787/100‑1 (MQ=255)
            gACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGTACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTtat                                                                                         <  1:3174832/100‑1 (MQ=255)
             aCCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTtata                                                                                        >  1:800516/1‑100 (MQ=255)
              ccGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTatat                                                                                       >  1:2874531/1‑100 (MQ=255)
                ggATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGc                                                                                     <  1:419085/100‑1 (MQ=255)
                ggATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGCGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGc                                                                                     <  1:3299946/100‑1 (MQ=255)
                 gATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGcc                                                                                    <  2:3456582/100‑1 (MQ=255)
                  aTTTTCAACGAATTCTCACGACAGACAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGc                                                                                     <  1:418735/98‑1 (MQ=255)
                  aTTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGccc                                                                                   <  1:1505393/100‑1 (MQ=255)
                    tttCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAg                                                                                 >  2:1179333/1‑100 (MQ=255)
                       cAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGTATGCACCACGACGGCGGCTTATCCCAGactaaccccagtccgacgagaa                                                                               <  1:1370517‑M2/99‑23 (MQ=255)
                       cAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAgggg                                                                              <  1:1274054/100‑1 (MQ=255)
                       cAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAgggg                                                                              <  1:433606/100‑1 (MQ=255)
                       cAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAgggg                                                                              >  1:2327686/1‑100 (MQ=255)
                       cAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAgggg                                                                              >  1:2903043/1‑100 (MQ=255)
                        aaCGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGc                                                                             <  2:1302975/100‑1 (MQ=255)
                        aaCGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGc                                                                             <  2:759021/100‑1 (MQ=255)
                        aaCGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGc                                                                             <  2:2743191/100‑1 (MQ=255)
                         aCGGATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAgggg                                                                              <  1:1844044/98‑1 (MQ=255)
                            aaTTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATc                                                                         <  1:3415596/100‑1 (MQ=255)
                              ttCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATccc                                                                       <  2:3183350/100‑1 (MQ=255)
                                ctcACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCcac                                                                     <  2:354406/100‑1 (MQ=255)
                                ctcACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCcac                                                                     <  2:573338/100‑1 (MQ=255)
                                ctcACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGCCTGCACTGCGAAGACGGCTCATTCGACCTACGTTCTTATCTGCCCCGCGGCAATcc                                                                        >  1:3703/1‑97 (MQ=255)
                                  cACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACaa                                                                   <  2:1036022/100‑1 (MQ=255)
                                  cACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCAGACCTACGTTCTTATATGCCCAGGGGCAATCCCACaa                                                                   >  2:815481/1‑100 (MQ=255)
                                   aCGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAAt                                                                  <  2:3636913/100‑1 (MQ=255)
                                     gACATAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATcc                                                                <  1:730361/100‑1 (MQ=255)
                                     gACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGTGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATcc                                                                <  2:23031/100‑1 (MQ=255)
                                     gACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATcc                                                                <  2:633110/100‑1 (MQ=255)
                                      aaaGAAAATTCTCGTCGGACTGGGGGTAGTGCCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCt                                                               >  2:2557222/3‑100 (MQ=255)
                                         gAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTaa                                                            >  2:1621251/1‑100 (MQ=255)
                                         gAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGGTATTATATGCCCAGGGGCAATCCCACCATCCTTaa                                                            >  1:692943/1‑100 (MQ=255)
                                          aaaaTTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAAc                                                           <  2:132785/100‑1 (MQ=255)
                                          aaaaTTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAAc                                                           >  1:170038/1‑100 (MQ=255)
                                          aaaaTTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAAc                                                           <  1:146386/100‑1 (MQ=255)
                                           aaaTTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACt                                                          <  2:1900611/100‑1 (MQ=255)
                                             aTTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCa                                                        >  1:2205373/1‑100 (MQ=255)
                                             aTTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCa                                                        <  2:393374/100‑1 (MQ=255)
                                              ttCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCaa                                                       >  2:547433/1‑100 (MQ=255)
                                               tctcTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGTAATCCCACAATCCTTAACTCAAc                                                      <  1:1082431/100‑1 (MQ=255)
                                                         cTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCAt                                            >  1:1204654/1‑100 (MQ=255)
                                                          tGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATc                                           >  2:454180/1‑100 (MQ=255)
                                                           gggggTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCa                                          <  2:389601/100‑1 (MQ=255)
                                                           gggggTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCa                                          >  2:2239270/1‑100 (MQ=255)
                                                            ggggTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCGAGGGGCAATCACACAATCCTTAACTCAACGCAGTACCAtaa                                          <  1:2261345/99‑3 (MQ=255)
                                                             gggTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAAc                                        >  2:2130202/1‑100 (MQ=255)
                                                              ggTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCGACGTTCTTCTCTGCCCCGGGGCAATCCCACAATCATTAACTCCACGCAGTACCATCa                                          >  1:2498766/1‑97 (MQ=255)
                                                               gTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAg                                      <  2:1876159/100‑1 (MQ=255)
                                                                  gtgtCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGc                                   <  1:2083268/100‑1 (MQ=255)
                                                                   tgtCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGcc                                  <  2:1043104/100‑1 (MQ=255)
                                                                   tgtCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGcc                                  <  1:1621244/100‑1 (MQ=255)
                                                                   tgtCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGcc                                  <  2:2407819/100‑1 (MQ=255)
                                                                    gtCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCa                                 >  2:3478406/1‑100 (MQ=255)
                                                                    gtCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCa                                 <  1:304757/100‑1 (MQ=255)
                                                                    gtCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCa                                 >  2:2094785/1‑100 (MQ=255)
                                                                      cGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGc                               >  2:2520064/1‑100 (MQ=255)
                                                                       ggATGCACCGCGAAGGCGGCTTATCCGACCTACGATCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGca                              >  1:1876119/1‑100 (MQ=255)
                                                                         aTGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATAAACAGTGCCAGca                              <  1:1648746/98‑1 (MQ=255)
                                                                          tGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGcacca                           <  2:899151/100‑1 (MQ=255)
                                                                          tGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGcacca                           >  2:3048055/1‑100 (MQ=255)
                                                                          tGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGcacca                           >  1:2399061/1‑100 (MQ=255)
                                                                          tGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGcacca                           >  1:536706/1‑100 (MQ=255)
                                                                            cACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGcaccac                          >  1:3230880/1‑99 (MQ=255)
                                                                            cACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACg                         >  1:1427150/1‑100 (MQ=255)
                                                                              ccGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGAc                       >  1:3208741/1‑100 (MQ=255)
                                                                               cgcgAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGAcc                      >  2:2434160/1‑100 (MQ=255)
                                                                                gcgATGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCg                     >  1:302194/1‑100 (MQ=255)
                                                                                   aaGGCGGCTTATCCTACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCAc                  <  1:3788754/100‑1 (MQ=255)
                                                                                   aaGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCAc                  <  1:800076/100‑1 (MQ=255)
                                                                                     ggcggcTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCg                >  2:2632160/1‑100 (MQ=255)
                                                                                     ggcggcTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCg                <  2:1715872/100‑1 (MQ=255)
                                                                                      gcggcTTATCCGACCTACGTTCTTATATGCCCAGGGTCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGa               <  1:2094777/100‑1 (MQ=255)
                                                                                       cggcTTACCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCGTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGAt              >  1:2625987/1‑100 (MQ=255)
                                                                                        ggcTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATg             <  2:2257087/100‑1 (MQ=255)
                                                                                           ttATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTc          <  1:488938/100‑1 (MQ=255)
                                                                                             aTCCGACactacccccagtccgaagagaattttctgtcgtgagaattcgttgaaaatccggtcctgacgggacttttacaaggaataaagatcgccatgt        <  1:1620690‑M2/100‑94 (MQ=255)
                                                                                             aTCCGACactacccccagtccgaagagaattttctgtcgtgagaattcgttgaaaatccggtcctgacgggacttttacaaggaataaagatcgccatgt        <  2:744609‑M2/100‑94 (MQ=255)
                                                                                              tCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATg       <  1:1979304/100‑1 (MQ=255)
                                                                                               ccGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATgg      >  1:659999/1‑100 (MQ=255)
                                                                                                cGACactacccccagtccgaagagaattttctgtcgtgagaattcgttgaaaatccggtcctgacgggacttttacaaggaataaagatcgccatgttac     <  1:620472‑M2/100‑97 (MQ=255)
                                                                                                cGACactacccccagtccgaagagaattttctgtcgtgagaattcgttgaaaatccggtcctgacgggacttttacaaggaataaagatcgccatgttac     <  1:1376016‑M2/100‑97 (MQ=255)
                                                                                                 gACactacccccagtccgaagagaattttctgtcgtgagaattcgttgaaaatccggtcctgacgggacttttacaaggaataaagatcgccatgttact    <  2:1385155‑M2/100‑98 (MQ=255)
                                                                                                 gACactacccccagtccgaagagaattttctgtcgtgagaattcgttgaaaatccggtcctgacgggacttttacaaggaataaagatcgccatgttact    >  2:2806562‑M2/1‑3 (MQ=255)
                                                                                                  acactacccccagtccgaagagaattttctgtcgtgagaattcgttgaaaatccggtcctgacgggacttttacaaggaataaagatcgccatgttacta   >  1:2271555‑M2/1‑2 (MQ=255)
                                                                                                   ccTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATGGATGc  >  2:3352133/1‑100 (MQ=255)
                                                                                                   ccTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATGGATGc  >  1:17090/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
AAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATGGATGC  >  NC_000913/2393063‑2393261

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.