Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC NC_000913 1,978,503 Δ776 bp 100% insB1insA insB1, insA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1978503–1979270 1979278 9–776 121 [0] [0] 121 insB1–insA insB1, insA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19785020 (0.000)104 (0.820) 69/162 NT 100% intergenic (‑305/+16) flhD/insB1 flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
?NC_000913 1979279 = 0 (0.000)intergenic (‑64/‑474) insA/uspC IS1 repressor TnpA/universal stress protein

Only 100 of 121 total aligned reads displayed.

CTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCG  >  NC_000913/1978403‑1978601
                                                                                                   |                                                                                                   
cTGTACTCGTCACTACACGCACATACAACGGAGGGGAGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATG                                                                                                     <  1:1953981‑M1/100‑1 (MQ=255)
  gTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGta                                                                                                   <  2:171026‑M1/100‑3 (MQ=255)
       cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagt                                                                                              >  2:1713605‑M1/1‑93 (MQ=255)
       cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagt                                                                                              >  2:325960‑M1/1‑93 (MQ=255)
       cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataag                                                                                               <  1:68745‑M1/99‑7 (MQ=255)
            cTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatac                                                                                         >  2:2393914‑M1/1‑88 (MQ=255)
            cTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatac                                                                                         <  1:3206445‑M1/100‑13 (MQ=255)
              acacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatactt                                                                                       >  2:3065323‑M1/1‑86 (MQ=255)
               cacGCACATACAACGGAGGGGGGCTGCGATTTTCAATACTGCGTGATGCAGCTCCCACAAAACACTCAATTACTTAACATAAATGtataagtcatacttt                                                                                      >  1:1107940‑M1/1‑85 (MQ=255)
               cacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttt                                                                                      <  2:138739‑M1/100‑16 (MQ=255)
                acGCACATACAACGGAGCGGGGCTGCGATCTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttt                                                                                      <  2:3695842‑M1/99‑16 (MQ=255)
                 cGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttg                                                                                    <  1:1826827‑M1/100‑18 (MQ=255)
                 cGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttg                                                                                    <  2:220029‑M1/100‑18 (MQ=255)
                 cGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttg                                                                                    >  1:315866‑M1/1‑83 (MQ=255)
                 cGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttg                                                                                    >  2:1893982‑M1/1‑83 (MQ=255)
                 cGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttg                                                                                    >  2:2159230‑M1/1‑83 (MQ=255)
                   cacaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtt                                                                                  <  2:2360596‑M1/100‑20 (MQ=255)
                    acaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttt                                                                                 <  1:2802908‑M1/100‑21 (MQ=255)
                      aTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttg                                                                               <  1:608172‑M1/100‑23 (MQ=255)
                       tACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                              >  1:2643795‑M1/1‑77 (MQ=255)
                       tACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                              >  1:3436931‑M1/1‑77 (MQ=255)
                         cAACGGAGGGGGGCTGCGCTTTTCAATACTGCGTGATGCAGATCACCCAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtttt                                                                                >  1:1305919‑M1/1‑75 (MQ=255)
                         cAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt                                                                            >  2:1733731‑M1/1‑75 (MQ=255)
                         cAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt                                                                            >  1:1601703‑M1/1‑75 (MQ=255)
                         cAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt                                                                            >  1:2974781‑M1/1‑75 (MQ=255)
                         cAACGGAGGGGGGCTGCGATTTTAAATAATGCGTTATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt                                                                            <  1:3478737‑M1/100‑26 (MQ=255)
                         cAAAGGAGGGGGGCCGCGCTTTTCAATAATGCGTGATGCAGATCACGCAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt                                                                            >  1:2600135‑M1/1‑75 (MQ=255)
                          aaCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtg                                                                           <  1:1374499‑M1/100‑27 (MQ=255)
                          aaCGGAGGGGGGCTACGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtg                                                                           <  1:1495789‑M1/100‑27 (MQ=255)
                                ggggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttc                                                                     <  2:1386137‑M1/100‑33 (MQ=255)
                                  ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaa                                                                   <  1:505809‑M1/100‑35 (MQ=255)
                                  ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaa                                                                   <  2:1581545‑M1/100‑35 (MQ=255)
                                  ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaa                                                                   >  1:839945‑M1/1‑66 (MQ=255)
                                    ggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatc                                                                 >  1:1558769‑M1/1‑64 (MQ=255)
                                    ggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatc                                                                 >  2:3650770‑M1/1‑64 (MQ=255)
                                    ggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatc                                                                 <  1:1549751‑M1/100‑37 (MQ=255)
                                     gCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatct                                                                <  2:1949748‑M1/100‑38 (MQ=255)
                                      cTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctg                                                               >  1:1621175‑M1/1‑62 (MQ=255)
                                      cTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctg                                                               >  1:1433179‑M1/1‑62 (MQ=255)
                                      cTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctg                                                               >  1:191621‑M1/1‑62 (MQ=255)
                                       tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctg                                                               <  1:777871‑M1/99‑39 (MQ=255)
                                        gCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgt                                                              >  1:3544295‑M1/1‑60 (MQ=255)
                                         cGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgtta                                                            >  1:259653‑M1/1‑59 (MQ=255)
                                          gATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaa                                                           <  2:123356‑M1/100‑43 (MQ=255)
                                            ttttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaa                                                         <  2:1081983‑M1/100‑45 (MQ=255)
                                             tttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa                                                        <  1:3620218‑M1/100‑46 (MQ=255)
                                             tttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa                                                        >  2:2182784‑M1/1‑55 (MQ=255)
                                             tttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttgtgttttgggtgtatttcaatctgttaaaaa                                                        >  1:2134087‑M1/1‑55 (MQ=255)
                                                cAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtt                                                     <  1:2415659‑M1/100‑49 (MQ=255)
                                                cAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtt                                                     >  1:1911382‑M1/1‑52 (MQ=255)
                                                 aataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATATATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttt                                                    <  1:3675557‑M1/100‑50 (MQ=255)
                                                 aataatGCGTGATGCAGATCACACAAAACACTCAATTACGTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttt                                                    <  1:325350‑M1/100‑50 (MQ=255)
                                                 aataatGCGTGATGCAGATCACACAAAACAATCAATTACTTAACATAAATGtataagtaatacttttgttttgtgtgtatttcaatctgttaaaaagttt                                                    >  1:854637‑M1/1‑51 (MQ=255)
                                                    aatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttc                                                 <  2:1733663‑M1/100‑53 (MQ=255)
                                                    aatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttttt                                                  >  1:2184365‑M1/1‑48 (MQ=255)
                                                      tGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgc                                               <  1:1961352‑M1/100‑55 (MQ=255)
                                                       gCGTAATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgct                                              >  1:280570‑M1/1‑45 (MQ=255)
                                                           gATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgc                                          >  2:1811642‑M1/1‑41 (MQ=255)
                                                           gATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgc                                          >  2:822148‑M1/1‑41 (MQ=255)
                                                            aTGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgct                                         >  2:1848129‑M1/1‑40 (MQ=255)
                                                             tGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttttttttttt                                         >  1:1144902‑M1/1‑39 (MQ=255)
                                                             tGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgcta                                        >  2:3584180‑M1/1‑39 (MQ=255)
                                                              gCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtttttggtgtatttcaatatgttaaaaggtttttcgctacgcta                                        >  1:1621127‑M1/1‑38 (MQ=255)
                                                               cAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagc                                      >  2:252774‑M1/1‑37 (MQ=255)
                                                                aGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttggctgtatttcaatctgttaaaaagtttttcgctacgctagca                                     >  1:1453528‑M1/1‑36 (MQ=255)
                                                                 gATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaa                                    <  1:2047355‑M1/100‑66 (MQ=255)
                                                                  aTCACACACAACACTCAATTTCTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagca                                     <  1:3410152‑M1/98‑65 (MQ=255)
                                                                  aTCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaag                                   <  1:2427868‑M1/100‑67 (MQ=255)
                                                                   tCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagc                                  >  2:819877‑M1/1‑33 (MQ=255)
                                                                   tCAAACAAAACACTCGATTTCTTAACATAAATGtataattcatacttttgtcttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaag                                   <  1:722753‑M1/99‑67 (MQ=255)
                                                                    cacacaAAACACTCAATTACTTAACATAAATGtctaagtcatactttagttttgggtgtatttaaatctgttaaaaagtttttagatacgctatcaat                                   >  1:1709311‑M1/1‑32 (MQ=255)
                                                                    cacacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagca                                 <  1:182969‑M1/100‑69 (MQ=255)
                                                                     acacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaa                                >  1:1166147‑M1/1‑31 (MQ=255)
                                                                      cacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaa                               >  2:935174‑M1/1‑30 (MQ=255)
                                                                         aaaaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaat                            >  2:1409270‑M1/1‑27 (MQ=255)
                                                                         aaaaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaat                            >  1:2611101‑M1/1‑27 (MQ=255)
                                                                            acacTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaa                         <  2:49533‑M1/100‑77 (MQ=255)
                                                                             cacTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaa                        <  2:2165235‑M1/100‑78 (MQ=255)
                                                                              acTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaac                       <  1:3341218‑M1/100‑79 (MQ=255)
                                                                                 cAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagg                    <  1:1048503‑M1/100‑82 (MQ=255)
                                                                                 cAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagg                    >  2:1273576‑M1/1‑19 (MQ=255)
                                                                                 cAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagg                    <  1:3584153‑M1/100‑82 (MQ=255)
                                                                                 cAATTACTTAACATAAATGtataagtcatactgttgttttgggggtatttcaatttgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagg                    <  1:2437209‑M1/100‑82 (MQ=255)
                                                                                  aaTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcataaatgaaacagg                    <  2:2489541‑M1/99‑82 (MQ=255)
                                                                                     tACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaata                >  2:1191530‑M1/1‑15 (MQ=255)
                                                                                     tACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaata                >  2:2898272‑M1/1‑15 (MQ=255)
                                                                                     tACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaata                >  1:3295567‑M1/1‑15 (MQ=255)
                                                                                      aCTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataa               >  1:3432162‑M1/1‑14 (MQ=255)
                                                                                      aCTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaaactgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataa               <  1:2318776‑M1/100‑87 (MQ=255)
                                                                                        ttAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatc             >  2:3517147‑M1/1‑12 (MQ=255)
                                                                                         tAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttatcgctacgctagcaagcaaaaatgaaacaggaataatcg            >  1:2670586‑M1/1‑11 (MQ=255)
                                                                                           aCATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaa          >  1:2780972‑M1/1‑9 (MQ=255)
                                                                                           aCATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaa          <  2:3151416‑M1/100‑92 (MQ=255)
                                                                                            natAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaa         >  2:946167‑M1/2‑8 (MQ=255)
                                                                                            cATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaa         >  2:1042249‑M1/1‑8 (MQ=255)
                                                                                            cATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaa         >  2:1076554‑M1/1‑8 (MQ=255)
                                                                                            cATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaa         >  2:2315087‑M1/1‑8 (MQ=255)
                                                                                              tAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatg       >  2:1858049‑M1/1‑6 (MQ=255)
                                                                                                  tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggga    >  1:103384‑M1/1‑2 (MQ=255)
                                                                                                   gtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatg  <  2:2799748‑M1/100‑100 (MQ=255)
                                                                                                   |                                                                                                   
CTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCG  >  NC_000913/1978403‑1978601

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: