New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2539608 =	NA (NA)	12 (0.090)	7/166	NT	NA	noncoding (2/36 nt)	REP175 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP175 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	2539638 =	NA (NA)					noncoding (32/36 nt)	REP175 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP175 (repetitive extragenic palindromic) element; contains 1 REP sequences

TTGAGTGAATGTTAAACGCCCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGGTTTGTAACCTGTAGACCTGATAAGACGCGCAAGCGTCGCATCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2539712‑2539608 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTTGTGCGAGAG  >  NC_000913/2539638‑2539736                                                                                                                                                                                                              TTGAGTGAATGTTAAACGCCCGGAGGCGCTTCCCGCGAGCCGGGCTTTTTAATGGCAATGTTTGTAACCTGTAGACCTGATAAGACGCGCAAGCGTCGCA                                                                                                          <  2:2130721/100‑1    AGTGAATGTTAAACGCCCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGGTTTGTAACCTGTAGACCTGATAAGACGCGCAAGCGTCGCATCA                                                                                                       >  2:3635426/1‑100    AGTGAATGTTAAACGCCCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGGTTTGTAACCTGTAGACCTGATAAGACGCGCAAGCGTCGCATCA                                                                                                       >  1:2110085/1‑100    AGTGAATGTTAAACGCCCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGGTTTGTAACCTGTAGACCTGATAAGACGCGCAAGCGTCGCATCA                                                                                                       >  1:562848/1‑100    AGTGAATGTTAAACGCCCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGGTTTGTAACCTGTAGACCTGATAAGACGCGCAAGCGTCGCATCA                                                                                                       >  1:619107/1‑100      TGAATGTTAAACGCCCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGGTTTGTAACCTGTAGACCTGATAAAAAGCGCAAGCGTCGCATCAG                                                                                                      >  1:816289/1‑99       GAATGTTAAACGCCCGGAGGCGCGTCGCGCGATCCGGGCTTTTTAATGGCAAGGTTTGTAACCTGTAGACCTGATAAGACGCGGAAGCGTCGCAGCAGG                                                                                                     <  2:1822153/99‑1                                                           GGTTTGTAACCTGTAGACCTGATAAGACGCGCAAGCGTCGCATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTC                                                >  1:3439755/1‑100                                                                      TGTAGACCTGATAAGACGCGCAAGCGTCGCATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAA                                     >  1:1713512/1‑100                                                                         AGACCTGATAAGACGCGCAAGCGTCGCATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACAT                                  >  1:2624611/1‑100                                                                           ACCTGATAAGACGCGCAAGCGTCGCATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTC                                >  1:3803874/1‑100                                                                           ACCTGATAAGACGCGCAAGCGTCGCATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAAACCGGATCACGGGAAGCGCCTCCGGGCGTTTAACATTC                                >  1:1350479/1‑100                                                                            CCTGATAAGACGCGCAAGCGTCGCATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCA                               >  2:1156445/1‑100                                                                            CCTGATAAGACGCGCAAGCGTCGCATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCA                               >  1:1519191/1‑100                                                                            CCTGATAAGACGCGCAAGAGTCGCATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGCCGTTTAACATTCA                               >  2:2462991/1‑100                                                                             CTGATAAGACGCGCAAGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCAC                              >  2:2268506/1‑100                                                                              TGATAAGACGCGCAAGCGTCGCATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACT                             >  2:2966731/1‑100                                                                              TGATAAGACGCGCAAGCGTCGCATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAACACGGATAGCGGGAAGCGACTCCGGGCGTTTAACATTCACT                             >  1:1975005/1‑100                                                                              TGATAAGACGCGCAAGAGAAGCATCAGGTCTACAGGTTAAAAACCTTGCCATTAAAAAGCCGGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCAC                              >  2:471775/1‑99                                                                                                  GCATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTTGT         <  2:3439716/100‑1                                                                                                     TCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTTGTGCG      <  2:1937918/100‑1                                                                                                      CAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTTGTGCGA     <  2:1315612/100‑1                                                                                                         GTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTTGTGCGAGAG  >  1:1082861/1‑100                                                                                                                                                                                                              TTGAGTGAATGTTAAACGCCCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGGTTTGTAACCTGTAGACCTGATAAGACGCGCAAGCGTCGCATCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2539712‑2539608 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCACTCAACCTATCAGGCGCTTTGTGCGAGAG  >  NC_000913/2539638‑2539736

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.