New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2539674	NA (NA)	18 (0.140)	10/164	NT	NA	intergenic (‑91/+43)	cysM/cysA	cysteine synthase B (O‑acetylserine sulfhydrolase B)/sulfate/thiosulfate transporter subunit
	?	NC_000913	= 2539688	NA (NA)					intergenic (‑105/+29)	cysM/cysA	cysteine synthase B (O‑acetylserine sulfhydrolase B)/sulfate/thiosulfate transporter subunit

TTCTAATGTACTCACGATC‑TCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2539569‑2539674 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccggaGGCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGGTTTGTAACCTGTAGACCTGATAAGACGCGCAAGCGTCGCATCAGGCAACACCACGTATGGAT  <  NC_000913/2539688‑2539591                                                                                                                                                                                                               TTCTAATGTACTCACGATC‑TCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAG                                                                                                          <  1:575075/100‑1 TTCTAATGTACTCACGATC‑TCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAG                                                                                                          <  1:3251537/100‑1  TCTAATGTACTCACGATC‑TCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGC                                                                                                         <  2:3669115/100‑1  TCTAATGTACTCACGATC‑TCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGC                                                                                                         <  1:1758792/100‑1  TCTAATGTACTCACGATC‑TCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGC                                                                                                         >  1:3823750/1‑100  TCTAATGTACTCACGATC‑TCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGC                                                                                                         <  1:2470001/100‑1  TCTAATGTACTCACGATC‑TCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCACGTCTACAGTTTACACACCTTGCCATTAAACAGC                                                                                                         >  2:302164/1‑100   CTAATGTACTCACGATC‑TCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCC                                                                                                        >  1:1047556/1‑100   CTAATGTACTCACGATC‑TCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCC                                                                                                        >  2:3737979/1‑100   CTAATGTACTCACGATC‑TCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCC                                                                                                        >  1:3401667/1‑100    TAATGTACTCACGATC‑TCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCC                                                                                                       >  2:734777/1‑100     AATGTACTCACGATC‑TCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCG                                                                                                      >  2:3680176/1‑100     AATGTACTCACGATC‑TCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCG                                                                                                      >  1:332530/1‑100     AATGTACTCACGATC‑TCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCG                                                                                                      >  1:1937934/1‑100       tgctcttcCGATCTTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGG                                                                                                     <  1:1140241/92‑1       TGTATTCACGATC‑TATATCCTTACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGA                                                                                                    <  1:2684537/100‑1              ACGATC‑TCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCATCTTATCAGGTCTACAGGTTACAAACCTTGCAATTAAAAAGCACGGA                                                                                                    >  1:3035021/1‑93                            ATACGTGGTGTTGCCTGATGCGACGCTTGCGTGTTTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGAGGCGCTTCCCGCGATCCGGG                                                                                <  1:54849/100‑1                            ATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGAGGCGCTTCCCGCGATCCGGG                                                                                <  2:1268804/100‑1                             TACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGAGGCGCTTCCCGCGATCCGGGC                                                                               <  1:2198737/100‑1                              ACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGAGGCGCTTCCCGCGATCCGGGCT                                                                              <  1:2375751/100‑1                               CGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGAGGCGCTTCCCGCGATCCGGGCT                                                                              <  2:2516274/99‑1                                 TGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGAGGCGCTTCCCGCGATCCGGGCTTTT                                                                           <  2:2223839/100‑1                                  GGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCTGGTCTATAGGTTACAAACCTTGCCATTAAAAAGCCCGGAGGCGCTTCCCGCGATCCGGGCTTTTT                                                                          <  1:334587/100‑1                                     GTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAAT                                                                       <  1:544311/100‑1                                      TTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAATGCCCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAATG                                                                      <  2:2082899/100‑1                                      TTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAATG                                                                      <  2:1088832/100‑1                                      TTGCCTGATGCGACGATTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAATG                                                                      <  1:3865060/100‑1                                       TGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAATGG                                                                     <  1:959682/100‑1                                       TGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAATGG                                                                     <  2:2674157/100‑1                                       TGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAATGG                                                                     <  2:3305317/100‑1                                       TGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAATGG                                                                     <  1:1032550/100‑1                                               GCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATT‑AAACGCCCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGGTTTG                                                            <  2:2712795/100‑1                                                    GCTTGCGCGTCGTTTCAGGTCTACAGTTTACTAACCTTGCCATTAAAAAGCCCGGAGGCGCTTCCCGTGATCCGGGCTTTTTAAT                                                                       <  2:3519137/85‑1                                                              CTTATCAGGTCTACAGGTTACAAACCTTGCTATTAAAAAGCCCGGAGTCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGGTTTGTAACCTGTAGACCT                                              <  1:3344239/100‑1                                                                                                     GCCCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGGTTTGTAACCTGTAGACCTGATAAGACGCGCAAGCGTCGCATCAGGCAACACCACGTA       <  2:3383647/100‑1                                                                                                     GCCCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGGGTTGTAACCTGTAGACCTGATAAGACGCGCAAGCGTCGCATCAGGCAACACCACGTA       <  2:1580235/100‑1                                                                                                      CCCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGGTTTGTAACCTGTAGACCTGATAAGACGCGCAAGCGTCGCATCAGGCAACACCACGTAT      <  1:1092581/100‑1                                                                                                       gCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGGTTTGTAACCTGTAGACCTGATAAGACGCGCAAGCGTCGCATCAGGCAACACCACGTATG     <  1:3928555/99‑1                                                                                                       CCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGGTTTGTAACCTGTAGACCTGATAAGACGCGCAAGCGTCGCATCAGGCAACACCACGTATG     <  1:2059998/100‑1                                                                                                       CCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGGTTTGTAACCTGTAGACCTGATAAGACGCGCAAGCGTCGCATCAGGCAACACCACGTATG     <  1:2201011/100‑1                                                                                                          GAGGCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGGTTTGTAACCTGTAGACCTGATAAGACGCGCAAGCGTCGCATCAGGCAACACCACGTATGGAT  <  2:1336675/100‑1                                                                                                          GAGGCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGGTTTGTAACCTGTAGACCTGATAAGACGCGCAAGCGTCGCATCAGGCAACACCACGTATGGAT  <  1:3366136/100‑1                                                                                                                                                                                                               TTCTAATGTACTCACGATC‑TCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2539569‑2539674 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccggaGGCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGGTTTGTAACCTGTAGACCTGATAAGACGCGCAAGCGTCGCATCAGGCAACACCACGTATGGAT  <  NC_000913/2539688‑2539591

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.