New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3217490	NA (NA)	14 (0.110)	9/164	NT	NA	noncoding (57/89 nt)	REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	= 3217522	NA (NA)					noncoding (89/89 nt)	REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences

AACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGgcctgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3217392‑3217490 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATGCGATGCTGGCGCATCTTATCAGGCCTGCGGGGTGTGTAGCGGGTGTAGGCCGGATAAGGCGCGTCAAGCGTCGCATCCGGCAATTGCACCGCGCCACT  <  NC_000913/3217522‑3217417                                                                                                                                                                                                               AACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGTAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTATACCCGCTACACACCCCGCAGG                                                                                                           <  2:2432662/100‑1  ACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGC                                                                                                          >  2:1076776/1‑100  ACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGC                                                                                                          >  1:3038136/1‑100  ACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGC                                                                                                          <  2:3470563/100‑1  ACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGC                                                                                                          <  2:1979428/100‑1   CTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCC                                                                                                         <  1:541149/100‑1   CTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCC                                                                                                         >  1:2259204/1‑100   CTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCCTATCCGGCCTACACCCGCTACACACCCCGCAGG                                                                                                           >  2:3814171/1‑98    TGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCT                                                                                                        <  2:3370539/100‑1    TGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCT                                                                                                        <  1:1856287/100‑1    TGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCT                                                                                                        <  1:1523498/100‑1    TGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCT                                                                                                        <  2:1066354/100‑1    TGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCC                                                                                                         <  2:2285303/99‑1     GGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCTATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTG                                                                                                       <  1:1741039/100‑1     GGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACCCACCCCGCAGGCCTG                                                                                                       >  2:2590904/1‑100     GGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTG                                                                                                       >  1:240891/1‑100     GGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCAGCAGGCCTG                                                                                                       >  2:1479007/1‑100      GATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGA                                                                                                      >  2:2950712/1‑100      GATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGA                                                                                                      <  2:2976000/100‑1       ATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGAT                                                                                                     <  2:170127/100‑1        TTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGAT                                                                                                     <  1:2737666/99‑1                              GCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCATGCCTGATGCGATGCTGGCGCATCTTATCAG                                                                              <  1:309005/100‑1                               CGCGGTGCAATTGCAGGATGCGACGCTTGACGCGCCTTATCCGGCCTACCCCCGCTACACACCCCGCAGGCCTGATGCGATGCTGGCGCATCTTATCAGG                                                                             <  2:2619194/100‑1                                GCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCTTACATCCGCTACACACCCCGCAGGCCTGATGCGATGCTGGCGCATCTTATCAGGC                                                                            <  1:3222357/100‑1                                GCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATGCGATGCTGGCGCATCTTATCAGGC                                                                            <  1:521550/100‑1                                GCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATGCGATGCTGGCGCATCTTATCAGGC                                                                            <  1:508501/100‑1                                 CGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATGCGATGCTGGCGCATCTTATCAGGCC                                                                           <  1:813401/100‑1                                 CGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATGCGATGCTGGCGCATCTTATCAGGCC                                                                           <  1:1507029/100‑1                                  GGTGCAATTGCCGGATGCGACTCTTGACGCGCCTTATTCGGTCTACACCCGCTACACACCCCGCAGGCCTGATGCGATGCTGGCGCATCTTATCAGGCCT                                                                          <  1:336001/100‑1                                  GGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATTCGATGCTGGCGCATCTTATCAGGCn                                                                           <  2:424911/99‑2                                  GGTGAAATTGCCGGATGCGACGCTTGACGGGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCTGGCGCATCTTATCA                                                                               <  2:930535/95‑1                                           GCCGGATGCGACGCTTGACGCGCCTTTTCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATGCGATGCTGGCGCATCTTATCAGGCCTGCGGGGTGT                                                                 <  1:1329410/100‑1                                                   cgcCGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATGCGATGCTGGCGCATCTTATCAGGCCTGCGGGGTGTGTAGCGGG                                                         <  2:1574071/97‑1                                                    GACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATGCGATGCTGGCGCATCTTATCAGGCCTGCGGGGTGTGTAGCGGG                                                         <  2:1574051/99‑1                                                         TTGACGCGCCTTATCCGGTCTACACCCGCTACACACCCCGTAGGCCTGATGCGATGCTGGCGCATCTTATCAGGCCTGCGGGGTGTGTAGCGGGTGTAGG                                                   <  1:1464664/100‑1                                                                                                    GCCTGATGCGATGCTGGCGCATCTTATCAGGCCTGCGGGGTGTGTAGCGGGTGTAGGCCGGATAAGGCGCGTCAAGCGTCGCATCCGGCAATTGCACCGC        >  1:3640828/1‑100                                                                                                    GCCTGATGCGATGCTGGCGCATCTTATCAGGCCTGCGGGGTGTGTAGCGGGTGTAGGCCGGATAAGGCGCGTCAAGCGTCGCATCCGGCAATTGCACCGC        >  2:387076/1‑100                                                                                                    GCCTGATGCGATGCTGGCGCATCTTATCAGGCCTGCGGGGTGTGTAGCGGGTGTAGGCCGGATAAGGCGCGTCAAGCGTCGCATCCGGCAATTGCACCGC        >  1:112370/1‑100                                                                                                     CCTGATGCGATGCTGGCGCATCTTATCAGGCCTGCGGGGTGTGTAGCGGGTGTAGGCCGGATAAGGCGCGTCAAGCGTCGCATCCGGCAATTGCACCGCG       >  1:1431835/1‑100                                                                                                     CCTGATGCGATGCTGGCGCATCTTATCAGGACTGCGGGGCGTGTAGCGGGTGCAGGCCGGATAAGGCGCGTCCAGCGTCGCATCCGGCACTTGCACCGC        >  2:368255/1‑99                                                                                                      CTGATGCGATGCTGGCGCATCTTATCAGGCCTGCGGGGTGTGTAGCGGGTGTAGGCCGGATAAGGCGCGTCAAGCGTCGCATCCGGCAATTGCACCGCGC      >  1:2295413/1‑100                                                                                                      CTGATGCGATGCTGGCGCATCTTATCAGGCCTGCGGGGTGTGTAGCGGGTGTAGGCCGGATAAGGCGCGTCAAGCGTCGCATCCGGCAATTGCACCGCGC      >  1:164958/1‑100                                                                                                      CTGATGCGATGCTGGCGCATCTTAACAGGCCTGCGGGGTGTGTAGCGGGTGTAGGCCGGATAAGGCGCGTCAAGCGTCGCATCCGGCAATTGCACCGC        >  2:3747552/1‑98                                                                                                       TGATGCGATGCTGGCGCATCTTATCAGGTCTGCGGGGTGTGTAGCGGGTGTAGGCCGGATAAGGCGCGTCAAGCGTCGCATCCGGCAATTGCACCGCGC      <  1:1713895/99‑1                                                                                                       TGATGCGATGCTGGCGCATCTTATCAGGCCTGCGGGGTGTGTAGCGGGTATAGGCCGGATAAAAAACGTCAAGCGTCGCATCAGGCAATTGCACCGCGCC     >  1:917284/1‑100                                                                                                          TGCGATGCTGGCGCATCTTATCAGGCCTGCGGGGTGTGTAGCGGGTGTAGGCCGGATAAGGCGCGTCAAGCGTCGCATCCGGCAATTGCACCGCGCCACT  >  1:444687/1‑100                                                                                                                                                                                                               AACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGgcctgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3217392‑3217490 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATGCGATGCTGGCGCATCTTATCAGGCCTGCGGGGTGTGTAGCGGGTGTAGGCCGGATAAGGCGCGTCAAGCGTCGCATCCGGCAATTGCACCGCGCCACT  <  NC_000913/3217522‑3217417

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.