| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3313290 | NA (NA) | 12 (0.090) | 6/164 | NT | NA | noncoding (39/77 nt) | REP242 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP242 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 3313328 | NA (NA) | noncoding (77/77 nt) | REP242 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP242 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
TGACAAAAAAGGGGCTGTTAGCCCCTTTTTAAAATTAATTTCAGGTGGAAGGGCTGTTCACGTTGACCTGATAAGACGCGCCAGCGTCACATCAGGCAATccatgc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3313191‑3313290‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATCAGGTCAACGTGAACAGCCCTTCCACCTGAAATTAAT < NC_000913/3313328‑3313224 attttAAAAAGGGGCTAACAGCCCCTTTTTAAAATTAATTTCAGGTGGAAGGGCTGTTCACGTTGACCTGATAAGACGCGCCAGCGTCACATCAGGCAAT > 1:705869/6‑100attttAAAAAGGGGCTAACAGCCCCTTTTTAAAATTAATTTCAGGTGGAAGGGCTGTTCACGTTGACCTGATAAGACGCGCCAGCGTCACATCAGGCAAT > 2:3359152/6‑100attttAAAAAGGGGCTAACAGCCCCTTTTTAAAATTAATTTCAGGTGGAAGGGCTGTTCACGTTGACCTGATAAGACGCGCCAGCGTCACATCAGGCAAT > 2:3098676/6‑100attttAAAAAGGGGCTAACAGCCCCTTTTTAAAATTAATTTCAGGTGGAAGGGCTGTTCACGTTGACCTGATAAGACGCGCCAGCGTCACATCAGGCAAT > 2:2140804/6‑100attttAAAAAGGGGCTAACAGCCCCTTTTTAAAATTAATTTCAGGTGGAAGGGCTGTTCACGTTGACCTGATAAAACACGCCAGCGTCACATCAGGCAAT > 2:792709/6‑100TGACAAAAAAGGGGCTGTTAGCCCCTTTTTAAAATTAATTTCAGGTGGAAGGGCTGTTCACGTTGACCTGATAAGACGCGCCAGCGTCACATCAGGCAAT > 1:2274873/1‑100TGACAAAAAAGGGGCTGTTAGCCCCTTTTTAAAATTAATTTCAGGTGGAAGAGCTGTTCACGTTGACCTGATAAGAAGCGCCAGCGTCACATCAGGCAAT > 2:1358221/1‑100TGACAAAAAAGGGGCTGTTAGCACCTTTTTAAAATTAATTTCAGGTGGAAGGGCTGTTCACGTTGACCTGATAAGACGCGCCAGCGTCACATCAGGCAAT > 2:1623882/1‑100 ttttAAAAAGGGGCTAACAGCCCCTTTTTAAAATTAATTTCAGGTGGAAGGGCTGTTCACGTTGACCTGATAAGACGCGCCAGCGTCACATCAGGCAATC > 1:3692250/5‑100 GACAAAAAAGGGGCTGTTAGCCCCTTTTTAAAATTAATTTCAGGTGGAAGGGCTGTTCACGTTGACCTGATAAGACGCGCCAGCGTCACATCAGGCAATC > 1:3596074/1‑100 GACAAAAAAGGGGCTGTTAGCCCCTTTTTAAAATTAATTTCAGGTGGAAGGACTGTTCACGTTGACCTGATAAGACGCGCCAGCGACACATCAGGCAATC > 1:601765/1‑100 GACAAAAAAGGGGCTGTTAGCCCCTTTTTAAAATTAATTTCAGGTGGAAGAGCTGTTCACGTTGACCTGATAAGACACGCCAGCGTCACATCAGGCAATC > 1:330505/1‑100 ttAAAAAGGGGCTAACAGCCCCTTTTTAAAATTAATTTCAGGTGGAAGGGCTGTTCACGTTGACCTGATAAGACGCGCCAGCGTCACATCAGGCAATCCA > 1:1182488/3‑100 ttAAAAAGGGGCTAACAGCCCCTTTTTAAAATTAATTTCAGGTGGAAGGGCTGTTCACGTTGACCTGATAAGACGCGCCAGCGTCACATCAGGCAATCCA > 1:358791/3‑100 ttAAAAAGGGGCTAACAGCCCCTTTTTAAAATTAATTTCAGGTGGAAGGGCTGTTCACGTTGACCTGATAAGACGCGCCAGCGTCACATCAGGCAATCCA > 2:2308341/3‑100 tgAAAAAGGGGCTAACAGCCCCTTTTTAAAATTAATTTCAGGTGGAAGGGCTGTTCACGTTGACCTGATAAGACGCGCCAGCGTCACATCAGGCAATCCA > 1:2649568/3‑100 CAAAAAAGGGGCTGTTAGCCCCTTTTTAAAATTAATTTCAGGTGGAAGGGCTGTTCACGTTGACCTGATACGACGCGCCAGCGTCACATCATGCAATCCA > 2:3875306/1‑100 CAAAAAAGGGGCTGTTAGCCCCTTTTTAAAATTAATTTCAGGTGGAAGGGCTGTTCACGTTGACCTGATAAGACGCGCCAGCGTCACATCAGGCAATCCA > 1:33198/1‑100 CAAAAAAGGGGCTGTTAGCCCCTTTTTAAAATTAATTTCAGGTGGAAGGGCTGTTCACGTTGACCTGATAAGACGCGCCAGCGTCACATCAGGCAATCCA > 2:402877/1‑100 CAAAAAAGGGGCTGTTAGCCCCTTTTTAAAATTAATTTCAGGTGGAAGGGCTGTTCACGTTGACCTGATAAGACACGCCAGCGTCACATCAGGCAATCC > 1:1675900/1‑99 CAAAAAAGGGGCTGTTAGCCCCTTTTTAAAATTAATTTCAGGTGGAAGGGCTGTACACGTTGACCTGATAAGACGCGCCAGCGTCACATCAGGCAATCCA > 1:3380800/1‑100 tAAAAAGGGGCTAACAGCCCCTTTTTAAAATTAATTTCAGGTGGAAGGGCTGTTCACGTTGACCTGATAAGACGCGCCAGCGTCACATCAGGCAATCCAT > 1:3753943/2‑100 AAAAAAGGGGCTGTTAGCCCCTTTTTAAAGTTAATTTCAGGGGGAAGGGCTGTTCACGTTGACCTGATAAGACGCGCCAGTGTCACATCAGGCAATCCAT < 2:3654366/100‑1 AAAAAGGGGCTAACAGCCCATATTTAAAATTAATTTCAGGTGGAAGGGCTGTTCACGTTGACCTGATAAGACGCGCCAGCGTCACATCAGGCAATACATG > 2:3311538/1‑100 AAAAGGGGCTGTTAGCCCCTTTTTAAAATTAATTTCAGGTGGAAGGGCTGTTCACGTTGACCTGATAAGACGCGCCAGCGTCACATCAGGCAATCCATGC > 1:2530907/1‑100 TTTCAGGTGGAAGGGCTGTTCACGTTGACCTGATAAGACGCGCCAGCGTCACATCAGGCAATCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGG < 1:2413212/100‑1 TCAGGTGGAAGGGCTGTTTACGTTGACCTGATAAGACGCTCCAGCGTCATATCAGGCAATCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGAT < 1:837701/100‑1 CAGGTGGAAGGGCTGTTCACGTTGACCTGATAAGACGCGCCAGCGTCACATCAGGCAATCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATT < 2:984873/100‑1 CAGGTGGAAGGGCTGTTCACGTTGACCTGATAAGACGCGCCAGCGTCACATCAGGCAATCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATT < 1:1936873/100‑1 AGGTGGAAGGGCTGTTCACGTTGATCTGATAAGACGCGCCAGCGTCACATCAGGCAATCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTG < 2:742165/100‑1 AGGTGGAAGGGCTGTTCACGTTGACCTGATAAGACGCGCCAGCGTCACATCAGGCAATCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTG < 1:2936634/100‑1 AGGTGGAAGGGCTGTTCACGTTGACCTGATAAGACGCGCCAGCGTCACATCAGGCAATCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTG < 1:1710042/100‑1 GGTGGAAGGGCTGTTCACGTTGACCTGATAAGACGCGCCAGTGTCACATCAGGCAATCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGC < 1:1347351/100‑1 GGTGGAAGGGCTGTTCACGTTGACCTGATAAGACGCGCCAGCGTCACATCAGGCAATCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGC < 1:3895129/100‑1 GGTGGAAGGGCTGTTCACGTTGACCTGATAAGACGCGCCAGCGTCACATCAGGCAATCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGC < 2:3281811/100‑1 GTGGAAGGGCTGTTCACGTTGACCTTATAAGTCGTGCCAGCGTCACATCAGGCAATCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCC < 1:1188656/100‑1 GTGGAAGGGCTGTTCACGTTGACCTGATAAGACGCGCCAGCGTCACATCAGGCAATCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCC < 1:2502814/100‑1 TCCATGCGGGATAAGGCGTTTACGCTGCATCCGGTATGGATTGCCTGATGTGACGCTGGCGCGTCTTATCAGGTCAACGTGAACAGCCCTTCCACCTGAA < 2:1527642/100‑1 TCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATCAGGTCAACGTGAACAGCCCTTCCACCTGAA < 1:1667321/100‑1 TCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATCAGGTCAACGTGAACAGCCCTTCCACCTGAA > 2:2540091/1‑100 CCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATCAGGTCAACGTGAACAGCCCTTCCACCTGAAA > 2:610028/1‑100 CCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATCAGGTCAACGTGAACAGCCCTTCCACCTGAAA > 2:3460415/1‑100 CATGCGGGATAAGGCGTTTACGCTGCATTCGGTATGGATTGCCTGATGTGACGCTGGCGCGTCTTATCAGGTCAACGTGAACAGCCCTTCCACCTGAAAT < 1:2671452/100‑1 CATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATCAGGTCAACGTGAACAGCCCTTCCACCTGAAAT < 2:3569617/100‑1 CATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATCAGGTCAACGTGAACAGCCCTTCCACCTGAAAT > 1:3688509/1‑100 CATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATCAGGTCAACGTGAACAGCCCTTCCACCTGAAAT > 1:1893677/1‑100 ATGCGGGATAAGGCGTTTACGTTGTAGCCAGCATGGATTGCATGATGGGACGCTGGCGCGTCTTATCAGGTCAACGTGAACAGCCCTTCCACCTGAAAT < 2:538299/99‑1 ATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATCAGGTCAACGTGAACAGCCTTTCCACCTGAAATT > 2:2794582/1‑100 ATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATCAGGTCAACGTGAACAGCCCTTCCACCTGAAATT > 2:806291/1‑100 ATGCGGGATAAGGCGTTTACACTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATCAGGTCAACGTGAACAGCCCTTCCACCTGAAATT > 2:3048753/1‑100 TGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATCAGGTCAACGTGAACAGCCCTTCCACCTGAAATTA > 2:2294495/1‑100 TGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATCAGGTCAACGTGAACAGCCCTTCCACCTGAAATTA > 1:2433454/1‑100 GCGGGATAAGGCGTTTACGCTGCATCTGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATCAGGTCAACGTGAACAGCCCTTCCACCTGAAATTAA > 1:2373534/1‑100 GCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATCAGGTCAACGTGAACAGCCCTTCCACCTGAAATTAA > 2:3014847/1‑100 CGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATCAGTTCAAAGTGAACAGCCCTTCCACCTGAAATTAAT < 2:2517397/100‑1 TGACAAAAAAGGGGCTGTTAGCCCCTTTTTAAAATTAATTTCAGGTGGAAGGGCTGTTCACGTTGACCTGATAAGACGCGCCAGCGTCACATCAGGCAATccatgc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3313191‑3313290‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATCAGGTCAACGTGAACAGCCCTTCCACCTGAAATTAAT < NC_000913/3313328‑3313224 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |