New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3674441	NA (NA)	11 (0.090)	6/164	NT	NA	noncoding (61/93 nt)	REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	= 3674473	NA (NA)					noncoding (93/93 nt)	REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences

GACCCGCGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3674343‑3674441 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGGAGCCAGGCCGAATAAAATCGTATGCCGGATAAGGCGTTTACGCCGCATCCGGCCTATTTTAAGGC  <  NC_000913/3674473‑3674369                                                                                                                                                                                                              GACCCGCGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGG                                                                                                          >  2:1017453/1‑100  ACCCGCGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGC                                                                                                         >  2:971523/1‑100   CCCGCGAATGCCGGGGAAAACGCAGCCTTCAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCTTACGATTTTATTCGGCCTGGCTCCCCGTAGGCC                                                                                                        <  2:2346606/100‑1   CCCGCGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCC                                                                                                        >  2:2652672/1‑100   CCCGCGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGC                                                                                                         <  2:2506083/99‑1    CCGCTAATGCCGGTGAAAACGCAGCCTTAAAACAAGCCGGAGGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGG                                                                                                          <  2:2549252/97‑1    CCGCGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCG                                                                                                       <  2:1752124/100‑1    CCGCGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCG                                                                                                       >  1:2982059/1‑100    CCGCGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCG                                                                                                       <  1:3444522/100‑1     CGCGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGG                                                                                                      >  1:2749685/1‑100     CGCGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGG                                                                                                      >  2:862920/1‑100      GCGAATGCCGGGGAAAATGCAGCCTTATAATAGTCCGGATGCGGGGTAAAAGGCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGA                                                                                                     <  1:290547/100‑1      GCGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGA                                                                                                     >  1:3928018/1‑100      GCGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTAGCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGG                                                                                                      <  1:826458/99‑1      GCGAATGCCGAGGAAAACGCAGCCGTAAAATAGGCCGGATGCGGCGTAAACGCTTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCC                                                                                                        <  2:3266563/97‑1       CGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGAT                                                                                                    <  2:106445/100‑1       CGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGAT                                                                                                    >  1:2062315/1‑100       CGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGAT                                                                                                    >  1:1637399/1‑100                             CTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATGCGATGCTGGCGCATCTTATCC                                                                              <  1:3063769/100‑1                             CTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATGCGATGCTGGCGCATCTTATCC                                                                              <  1:1829694/100‑1                              TTAAAATATGTCGGATGCTGCGTAAATGTCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATGCGATGCTGGCGCATCTTATCCG                                                                             <  1:1721601/100‑1                              TTAAAATAGGGCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGTCCGGTTGCGTTGTTGGCGCATCTTATCC                                                                              <  2:3906640/99‑1                               TAAAATAGGCCGGATGCGGCGTAAACGTCTTATTCGGCATATGATTTTATTCGGACTGGATCCCCGTAGGACGGATGCGATGCTGGCGCATCTTATCCGG                                                                            <  1:326584/100‑1                                AAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATGCGATGCTGGCGCATCTTATCCGGC                                                                           <  1:695920/100‑1                                AAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATGCGATGCTGGCGCATCTTATCCGGC                                                                           <  2:2625979/100‑1                                AAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATGCGATGCTGGCGCATCTTATCCGGC                                                                           <  2:638478/100‑1                                AAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATGCGATGCTGGCGCATCTTATCCGGC                                                                           <  2:55216/100‑1                                  AATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATGCGATGCTGGCGCATCTTATCCGGCCT                                                                         <  2:3818262/100‑1                                                  CGTAAACGTCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGGAGCCAGGCC                                                          <  1:971534/99‑1                                                                                                    GCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGGAGCCAGGCCGAATAAAATCGTATGCCGGATAATGCGTGTACGCCACATCCGGCCTATTTT       >  1:3142442/1‑100                                                                                                    GCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGGAGCCAGGCCGAATAAAATCGTATGCCGGATAAGGCGTTTACGCCGCATCCGGCCTATTTT       >  1:862931/1‑100                                                                                                    GCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGCGGAGCCAGGCCGAATAAAATCGTATGCCGGATAAGGCGTTTACGCCGCATCCGGCCTATTTT       >  2:2080544/1‑100                                                                                                     CCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGGAGCCAGGCCGAATAAAATCGTATGCCGGATAAGGCGTTTACGCCGCATCCGGCCTATTTTA      >  1:1441460/1‑100                                                                                                      CGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGGAGCCAGGCCGAATAAAATCGTATGCCGGATAAGGCGTTTACGCCGCATCCGGCCTATTTTAA     <  2:398127/100‑1                                                                                                       GGATGCGATGCTTGCGCATCTTATCCGGCCTACGGGGAGCCAGGCCGAATAAAATCGTATGCCGGATAAGGCGTTTACGCCGCATCCGGCCTATTTTAAG    <  1:1111083/100‑1                                                                                                        GATGCGATGCTGGCGCATCTTATCCGGCCTACGGGGAGCCAGGCCGAATAAAATCGTATGCCGGATAAGGCGTTTACGCCTCATCCGGCCTATTTTAAG    <  2:44736/99‑1                                                                                                        GATGCGATGCTGGCGCATCTTATCCGGCCTACGGGGAGCCAGGCCGAATAAAATCGTATGCCGGATAAGGCGTTTACGCCGCATCCGGCCTATTTTAAGG   <  1:3556271/100‑1                                                                                                        GATGCGATGCTGGCGCATCTTATCCGGCCTACGGGGAGCCAGGCCGAATAAAATCGTATGCCGGATAAGGCGTTTACGCCGCATCCGGCCTATTTTAAGG   <  1:60708/100‑1                                                                                                        GATGCGATGCTGGCGCATCTTATCCGGACTACGGGGAGCAAGGCCGAATAAAATCGTATGCCGGATAAGGCGTTTACGCCGCATCCGGCCTATTTTAAGG   <  2:454256/100‑1                                                                                                        GATGCGATGCTCGCGCATCTTATCCGGTCTACGGGTAGCCAGGCCGAATAAAATCGTATGCCGGATAAGGCGTTTACTCCGCATCCGGCCTATTTTAAGG   <  2:3591664/100‑1                                                                                                          TGCGATGCTGGCGCATCTTATCCTGCCGACGGGGAGTCAGGCCGAATAAAATCGTATGCCGGATAAGGCGTTTACGCCGCATCCGGCCTATTTTAAGGC  <  2:3473869/99‑1                                                                                                                                                                                                              GACCCGCGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3674343‑3674441 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGGAGCCAGGCCGAATAAAATCGTATGCCGGATAAGGCGTTTACGCCGCATCCGGCCTATTTTAAGGC  <  NC_000913/3674473‑3674369

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.