| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3962703 | NA (NA) | 8 (0.060) | 6/166 | NT | NA | noncoding (4/36 nt) | REP286 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP286 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 3962735 | NA (NA) | noncoding (36/36 nt) | REP286 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP286 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
GCGCAAAGTGGTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGgccgga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3962605‑3962703‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGATGCTGACGCATCTTTTCCGGCCTTGATTATTTCCCTCGTTTTGCCGCCATCATCGCTTTCAGATTCGCCAGATGGCTTTGCCCTTTCTGCATC < NC_000913/3962735‑3962632 GCGCAAAGTGGTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGG > 2:2286645/1‑100 CGCAAAGTGGTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCCTCTGGCGAATCTGAACGCGATGATGGCGGCAGAACGAGGGAAATACTCAAGGC > 1:2276639/1‑100 CGCAAAGTGGTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGC < 2:702066/100‑1 GCAAAGTGGTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCC > 2:2935818/1‑100 GCAAAGTGGTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCC > 1:2782150/1‑100 GCAAAGTGGTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCC > 1:3559689/1‑100 CAAAGTGGTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCG > 1:2163697/1‑100 CAAAGTGGTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCG > 1:2940495/1‑100 AAAGTGGTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGG < 2:3603284/100‑1 AAAGTGGTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGG < 2:2414596/100‑1 AAAGTGGTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGG < 1:2597904/100‑1 CAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGTAAAACGAGGGAAATAATCAAGGCCGGATGCGATGCTGACGCATCTTTTCCGGC < 1:244707/100‑1 AGAAAGGGCAAAGCCATCTGGAGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGATGCGATGCTGACGCATCTTTTCCGGC < 2:1341411/99‑1 AAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGATGCGATGCTGACGCATCTTTTCCGGCCTT < 1:925046/100‑1 GCAAAGCCATCTGGCGAATCTGAAATGTATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGATGCGATGCTGACGCATCTTTTCCGGCCTTGATT < 1:660333/99‑1 GCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGATGCGATGCTGACGCATCTTTTCCGGCCTTGATT < 2:1829267/99‑1 AAAGCCATCTGGTGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGATGCGATGCTGACGCATCTTTTCCGGCCTTGAT < 1:650537/96‑1 AGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGATGCGATGCTGACGCATCTTTTCCGGCCTTGATTATTTC < 1:561304/100‑1 TGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCTGACGCATCTTTTCCGGCCTTGATTATTTCCCTCGTTTTGCCGCCATCATCGCTTTCA < 1:2403820/100‑1 GCCGGATGCGATGCTGACGCATCTTTTCCGGCCTTGATTATTTCCCTCGTTTTGCCGCCATCATCGCTTTCAGATTCGCCAGATGGCTTTGCCCTTTCTG < 1:1439905/100‑1 GCCGGATGCGATGCTGACGCATCTTTTCCGGCCTTGATTATTTCCCTCGTTTTGCCGCCATCATCGCTTTCAGATTCGCCAGATGGCTTTGCCCTTTCTG < 2:1037827/100‑1 GCCGGATGCGATGCTGACGCATCTTTTCCGGCCTTGATTATTTCCCTCGTTTTGCCGCCATCATCGCTTTCAGATTCGCCAGATGGCTTTGCCCTTTCTG > 2:1439890/1‑100 GCCGGATGCGATGCTGACGCATCTTTTCCGGCCTTGATTATTTCCCTCGTTTTGCCGCCATCATAGCTTTAAGATTAGCCAGATGGCTTTGCCCTTTCTG > 1:2072988/1‑100 GCCGGATGCGATGCTGACGCATCTTTTCCGGCCTTGATTATTTCCCTCGTTTTGCCGCCACCATCGCATTCAGATTCGCCAGATGGCTTTGCCCTTTCT > 2:2747134/1‑99 CGGATGCGATGCTGACGCATCTTTTCCGGCCTTGATTATTTCCCTCGTTTTGCCGCCATCATCGCTTTCAGATTCGCCAGATGGCTTTGCCCTTTCTGCA < 2:2705727/100‑1 GGATGCGATGCTGACGCATCTTTTCCGGCCTTGATTATTTCCCTCGTTTTGCCGCCTTCATCGCTTTCAGATTCGCCAGATGGCTTTGCCCTTTCTGCA > 2:2498129/1‑99 GGATGCGATGCTGACGCATCTTTTCCGGCCTTGATTATTTCCCTCGTTTTGCCGCCATCATCGCTTTCAGATTCGCCAGATGGCTTTGCCCTTTCTGCAT > 1:2840360/1‑100 GGATGCGATGCTGACGCATCTTTTCCGGCCTTGATTATTTCCCTCGTTTTGCCGCCATCATCGCTTTCAGATTCGCCAGATGGCTTTGCCCTTTCTGCAT > 1:225370/1‑100 GGATGCGATGCTGACGCATCTTTTCCGGCCTTGATTATTTCCCTCGTTTTGCCGCCATCATCGCTTTCAGATTCGCCAGATGGCTTTGCCCTTTCTGCAT < 1:2030237/100‑1 tATGCGATTCTGTCGCTTCTTTTCCGGCCTTGTTTATTTCCCTCGTTTTGCCGCCATCATCGCTTTCAGATTCTCCAGATGGCTTTGCCCTTTCTGCAT < 2:3048190/98‑1 GATGCGATGCTGACGCATCTTTTCCGGCCTTGATTATTTCCCTCGTTTTGCCGCCATCATCGCTTTCAGATTCTCCATATGGTTTTGCCCTTTCTGCATC < 2:934023/100‑1 GATGCGATGCTGACGCATCTTTTCCGGCCTTGATTATTTCCCTCGTTTTGCCGCCATCATCGCTTTCAGATTCGCCAGATGGCTTTGCCCTTTCTGCATC < 1:822775/100‑1 GCGCAAAGTGGTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGgccgga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3962605‑3962703‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGATGCTGACGCATCTTTTCCGGCCTTGATTATTTCCCTCGTTTTGCCGCCATCATCGCTTTCAGATTCGCCAGATGGCTTTGCCCTTTCTGCATC < NC_000913/3962735‑3962632 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |