New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3962703NA (NA)8 (0.060) 6/166 NT NA noncoding (4/36 nt) REP286 (repetitive extragenic palindromic) element; contains 1 REP sequences REP286 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 3962735 NA (NA)noncoding (36/36 nt) REP286 (repetitive extragenic palindromic) element; contains 1 REP sequences REP286 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 224 total aligned reads displayed.

AGCGCAAAGTGGTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGAGCAATA  >  NC_000913/3962604‑3962802
                                                                                                   |                                                                                                    
aGCGCAAAGTGGTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAg                                                                                                      <  1:1376103/100‑1 (MQ=255)
  cgcAAAGTGGTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCCTCTGGCGAATCTGAACGCGATGATGGCGGCAGAACGAGGGAAATACTCAAGgc                                                                                                    >  1:2276639‑M1/1‑98 (MQ=255)
   gcAAAGTGGTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGgcc                                                                                                   >  1:3559689‑M1/1‑97 (MQ=255)
     aaaGTGGTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGgccgg                                                                                                 <  2:2414596‑M1/100‑6 (MQ=255)
         tGGTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGaaaa                                                                                             <  2:2903992/100‑1 (MQ=255)
          ggTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAg                                                                                            >  2:57065/1‑100 (MQ=255)
            tCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGGTGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGAt                                                                                          <  2:2475787/100‑1 (MQ=255)
            tCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGAt                                                                                          >  1:1767031/1‑100 (MQ=255)
             cAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATg                                                                                         >  1:2785080/1‑100 (MQ=255)
               gcgcCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGACATAATCAAGGCCGGAAAAGa                                                                                           >  2:1052074/1‑96 (MQ=255)
               gcgcCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCg                                                                                       >  2:3006580/1‑100 (MQ=255)
               gcgcCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCg                                                                                       <  1:1824252/100‑1 (MQ=255)
               gcgcCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTAGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCg                                                                                       <  2:2288306/100‑1 (MQ=255)
                   cGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAg                                                                                   <  2:1449323/100‑1 (MQ=255)
                    gaaaaaAGGATACAGAAAGGGAAAAGCCATCTGAAGAATATGAAAGCAATGATGGCGGCAAAACGATGTAAATAATAAAAAAAGAAAAAGATGCGTCAgc                                                                                  <  2:11299/100‑1 (MQ=255)
                     aagaaCGGATGCAGAAAGGGTAAAGTCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAgca                                                                                 <  1:868158/100‑1 (MQ=255)
                      agaaCGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAgcat                                                                                >  1:2894897/1‑100 (MQ=255)
                         aCGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAgcatcgc                                                                             >  1:1846142/1‑100 (MQ=255)
                         aCGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAgcatcgc                                                                             >  1:3502959/1‑100 (MQ=255)
                          cGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAgcatcgca                                                                            <  1:3777794/100‑1 (MQ=255)
                            gATGCAGAAAGGGCAAAACCATATGGAGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATC                                                                          <  2:934023‑M2/100‑1 (MQ=255)
                             aTGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCC                                                                         >  1:225370‑M2/1‑100 (MQ=255)
                             aTGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCC                                                                         >  1:2840360‑M2/1‑100 (MQ=255)
                                cAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGTAAAACGAGGGAAATAATCAAGgccggatgcgatgctgacgcatcttttccggc                                                                      <  1:244707‑M1/100‑33 (MQ=255)
                                 aGAAAGGGTAAAGCTATCTGGCGAATTTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCa                                                                     <  1:1664953/100‑1 (MQ=255)
                                 aGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCa                                                                     <  2:2264376/100‑1 (MQ=255)
                                 aGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCa                                                                     >  1:2590500/1‑100 (MQ=255)
                                 aGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCa                                                                     >  2:2621876/1‑100 (MQ=255)
                                 aGAAAGGGCAAAGCCATCTGGAGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGgccggatgcgatgctgacgcatcttttccggc                                                                      <  2:1341411‑M1/99‑33 (MQ=255)
                                  gAAAGGGCAAAGCCATCTGGCGAATCTTAAAGCGATGATGTCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCAc                                                                    <  1:155030/100‑1 (MQ=255)
                                   aaaGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACt                                                                   >  1:2100051/1‑100 (MQ=255)
                                   aaaGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACt                                                                   <  1:3164785/100‑1 (MQ=255)
                                      gggCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTAc                                                                <  2:1235876/100‑1 (MQ=255)
                                      gggCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAACCAAGGCCGGACAAGATGCGTCAGCATCGGATCCGGCACtttc                                                                <  1:2642403/100‑3 (MQ=39)
                                       ggCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACt                                                               <  1:3476714/100‑1 (MQ=255)
                                        gCAAAGCCATCTGGCGAATCTGAAATGTATGATGGCGGCAAAACGAGGGAAATAATCAAGgccggatgcgatgctgacgcatcttttccggccttgatt                                                               <  1:660333‑M1/99‑40 (MQ=255)
                                         cAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAACATCGCATCCGGCACTTACTCa                                                             >  2:2645100/1‑100 (MQ=255)
                                          aaaGCCATCTGGTGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGgccggatgcgatgctgacgcatcttttccggccttgat                                                                <  1:650537‑M1/96‑39 (MQ=255)
                                          aaaGCCATATGGTGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCAt                                                            <  1:3806785/100‑1 (MQ=255)
                                           aaGCCATCTGGCGAATCTTAAAGCTATTATGGTGTCAAAACGATAGAAATAATCAAGGCCAGAAAAGAAGCGTCAGCATCGCATCCGGCACTTACTCAtt                                                           <  1:2171748/100‑1 (MQ=255)
                                           aaGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCAtt                                                           <  1:3929817/100‑1 (MQ=255)
                                           aaGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCAtt                                                           <  1:3216099/100‑1 (MQ=255)
                                             gCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTaa                                                         <  2:2068087/100‑1 (MQ=255)
                                             gCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTaa                                                         >  2:254331/1‑100 (MQ=255)
                                              ccATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAAt                                                        <  1:3375893/100‑1 (MQ=255)
                                               cATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATg                                                       >  2:872062/1‑100 (MQ=255)
                                                aTCTGGCGAATCTGAAAGCGATGATGGCTGCAATACGATGTAAATAATCAAGGTCGGAAAATATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGc                                                      <  2:3323113/100‑1 (MQ=38)
                                                aTCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGc                                                      <  2:2519104/100‑1 (MQ=255)
                                                 tCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCa                                                     <  1:1542570/100‑1 (MQ=255)
                                                 tCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCa                                                     <  2:1628308/100‑1 (MQ=255)
                                                 tCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCa                                                     <  1:2326090/100‑1 (MQ=255)
                                                  cTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATTCAc                                                    >  1:2672093/1‑100 (MQ=255)
                                                    ggCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACtt                                                  >  2:2774970/1‑100 (MQ=255)
                                                        aaTCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAg                                              <  1:2761078/100‑1 (MQ=255)
                                                         aTCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGc                                             <  1:57067/100‑1 (MQ=255)
                                                          tCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCg                                            <  1:1806936/100‑1 (MQ=255)
                                                          tCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCg                                            >  1:1451519/1‑100 (MQ=255)
                                                          tCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCg                                            <  1:1037838/100‑1 (MQ=255)
                                                           cTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCgg                                           <  1:3046883/100‑1 (MQ=255)
                                                           cTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCgg                                           >  2:2149470/1‑100 (MQ=255)
                                                            tGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGc                                          >  2:2937664/1‑100 (MQ=255)
                                                            tGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGc                                          <  2:2716551/100‑1 (MQ=255)
                                                                 gCGATGGTGGTGGCAAAACGAAAGAAATAATCAAGGCAGGAAAAGATGCGTCAGCATCGCATACGGAACTTGCTAATTAATGCACTTCAAGGGGGCAg                                       >  2:949199/1‑98 (MQ=255)
                                                                 gCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTg                                     <  1:2706622/100‑1 (MQ=255)
                                                                 gCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTg                                     <  2:3634058/100‑1 (MQ=255)
                                                                  cGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTgg                                    <  2:1421936/100‑1 (MQ=255)
                                                                  cGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTgg                                    <  1:3098002/100‑1 (MQ=255)
                                                                   gatgatGGCGGCAAAACGAGGGGAATAATAAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCTGTgg                                    >  2:1188984/1‑99 (MQ=255)
                                                                   gatgatGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGa                                   <  2:48186/100‑1 (MQ=255)
                                                                   gatgatGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGa                                   <  2:2030219/100‑1 (MQ=255)
                                                                     tgatgGCGGCAAAACGATGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACa                                 <  1:1726430/100‑1 (MQ=255)
                                                                     tgatgGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACa                                 <  2:472908/100‑1 (MQ=255)
                                                                     tgatgGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACa                                 <  2:1798368/100‑1 (MQ=255)
                                                                       atgGGGGCAAAACGAGTGAAATAATCAAGGTCGGAAAAGATGCGTCAGTATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATa                               <  1:1271877/100‑1 (MQ=255)
                                                                        tgGCGGCAAAACGAGGGAAATAATCAAGgccggaaaagatgctgacgcatcttttccggccttgattatttccctcgttttgccgccatcatcgctttca                              <  1:2403820‑M1/100‑73 (MQ=255)
                                                                        tgGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAg                              >  1:558626/1‑100 (MQ=255)
                                                                        tgGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAg                              >  1:3433269/1‑100 (MQ=255)
                                                                         ggcggcAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGc                             <  1:797104/100‑1 (MQ=255)
                                                                             gcAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTg                         >  1:3900187/1‑100 (MQ=255)
                                                                             gcAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTg                         <  2:3397765/100‑1 (MQ=255)
                                                                             gcAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTAGACATAAct                            >  2:690128/1‑97 (MQ=255)
                                                                               aaaaCGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGTATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑cc                      <  1:123227/100‑1 (MQ=255)
                                                                               aaaaCGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAACGGCCAGTGGACATAGcac                           >  1:1738639/1‑94 (MQ=255)
                                                                                aaaCGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑cc                      >  2:2702800/1‑99 (MQ=255)
                                                                                  aCGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCAc                    <  2:1554628/99‑1 (MQ=255)
                                                                                     aGGGAAATAATCAAGGCCGGAAAATATGTGTCATTATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGc                <  1:1108604/100‑1 (MQ=255)
                                                                                      gggAAATAATCAAGGCCGGAAAAGATGCGTCAGCATTGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCTAGTGGACATAGCTCTG‑CCACTg                  <  2:1828972/97‑1 (MQ=255)
                                                                                      gggAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCaagatcg               >  1:546663/1‑94 (MQ=255)
                                                                                      gggAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCt               >  1:2427810/1‑100 (MQ=255)
                                                                                      gggAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCt               >  1:673153/1‑100 (MQ=255)
                                                                                      gggAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGG‑CAGAGCTATGTCCACTGGcc               <  1:680876/100‑2 (MQ=37)
                                                                                        gAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCttt             >  1:810486/1‑100 (MQ=255)
                                                                                        gAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGG‑CAGAGCTATGTCCACTGGcc               <  2:3770842/98‑2 (MQ=37)
                                                                                        gAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAACGGCCAGAGGACATAGCTCTG‑CCACTGGCttt             >  1:3593804/1‑100 (MQ=255)
                                                                                         aaaTAATCACGGCCGGAAAAGATGCGTCAGTATCGCACCCGCCACTTACTCATTAATGCACTTCCAGCTGCTAGTGG‑CAGAGCTATGTCCACTGGccgc             <  2:358771/99‑4 (MQ=19)
                                                                                         aaaTAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAACGGCCAGTGGACATAGCTCTG‑CCACTGGCttt             >  1:1962791/1‑99 (MQ=255)
                                                                                            taatCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTg         <  1:2935549/100‑1 (MQ=255)
                                                                                             aatCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCcttgattatttccctcgttttgccgccatcatcgctttcagattcgccagatggctttgc          <  2:1829267‑M2/99‑61 (MQ=255)
                                                                                                 aaGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCcttgattatttccctcgttttgccgccatcatcgctttcagattcgccagatggctttgcccttt     <  1:925046‑M2/100‑66 (MQ=255)
                                                                                                   ggCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGAGCaata  >  1:143447/1‑100 (MQ=255)
                                                                                                   |                                                                                                    
AGCGCAAAGTGGTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGAGCAATA  >  NC_000913/3962604‑3962802

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.