New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 225755114 (0.820)28 (0.210) 10/170 NT 19.9% intergenic (+180/‑4) alaV/rrlH tRNA‑Ala/23S ribosomal RNA of rrnH operon
?NC_000913 2729217 = 117 (0.880)intergenic (‑33/+152) rrlG/gltW 23S ribosomal RNA of rrnG operon/tRNA‑Glu

CTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/225653‑225755
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATATCAAACAAGACTTA  >  NC_000913/2729217‑2729315
                                                                                                                                                                                                          
CTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGG                                                                                                        <  1:713007/100‑1
 TGGATCAAGCTGAAAATTGAAACACTGAATAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGT                                                                                                       <  1:161139/100‑1
 TGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGT                                                                                                       <  1:3192163/100‑1
                           GAACAACGAAAGCTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGCGAAAATTTGAGAGACTCACGAAC                                                                             >  1:2572954/1‑100
                                    AAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAAAATTTGAGAGACTCACGAACAAATTTCAT                                                                    >  2:631210/1‑100
                                                 GTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTC                                                       >  2:852490/1‑100
                                                    TCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTCAGTGTTTCAAT                                                    >  1:3028577/1‑100
                                                    TCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGCGAAAATTTGAGAAACTCACGAACAACTTTAGTTGTACAGTGTTTCAAT                                                    >  1:460873/1‑100
                                                     CTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATT                                                   >  2:2001713/1‑100
                                                       CAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTT                                                 >  2:1514292/1‑100
                                                         AATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAAAATTTGAGAGACTCACAAACAACTTTCATTGTTCAGTGTTTCAATTTTCA                                               >  1:1812742/1‑100
                                                         AATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCA                                               >  1:1329537/1‑100
                                                         AATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCA                                               >  1:3774478/1‑100
                                                         AATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCA                                               >  1:828541/1‑100
                                                         AATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGCGAAAATTTGAGAGACTCACGAACAACTCTCGTTGTTCAGTGTTTCAATTTTCA                                               >  2:2048013/1‑100
                                                          ATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCA                                               >  2:3598893/1‑99
                                                           TTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGC                                             >  1:2318355/1‑100
                                                             TTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTT                                           >  1:486725/1‑100
                                                             TTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTT                                           >  2:1744432/1‑100
                                                              TCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCATTGATCAGTGTTTCAATTTTCAGCTTG                                          >  1:1978613/1‑100
                                                               CGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTCAGTGTTTCAATTTTCAGCTTGA                                         >  2:3314810/1‑100
                                                               CGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTAGTTCAGTGTTTCAATTTTCAGCTTGA                                         >  1:567299/1‑100
                                                                GCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTCAGTGTTTCAATTTTCAGCTTGAT                                        >  2:309396/1‑100
                                                                GCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTAAGTGTTTCAATTTTCAGCTTGAT                                        >  1:204122/1‑100
                                                                GCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGCGAAAATTTGAGAGACTCACGAACAACTCTCGTTGTTCAGTGTTTCAATTTTCAGCTTGAT                                        >  1:1095640/1‑100
                                                                 CAACACGATGATGGATCGCAAGAAACATCTTCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTATCATTGTTCAGTGTTTCAATTTTCAGCTTGATC                                       >  1:1489678/1‑100
                                                                     ACGATGATGGATCGCAAGAAACATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCATTGATCAGTATTTCAATTTTCAGATTGATCCAGA                                   >  1:630138/1‑100
                                                                       GATGATGAATCGAAAGAAACATCTTCGGGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATT                                 <  1:852500/100‑1
                                                                         TGATGAATCGAAAGAAACATCTTCGGGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTT                               <  1:1744447/100‑1
                                                                              GATCGCAAGAAACATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAG                          >  2:3389213/1‑100
                                                                                    AAGAAACATCTTCGGGTTGTGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAA                    <  2:1812727/100‑1
                                                                                                    TTGCGAAAATTTGAGAGACTCACGAACAACTTTTATTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATATCAAACAAGACT    <  1:3762947/100‑1
                                                                                                     TGCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATATCAAACAAGACTT   <  1:1740280/100‑1
                                                                                                     TGCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATATCAAACAAGACTT   >  1:2605098/1‑100
                                                                                                      GCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATATCAAACAAGACTTA  >  2:1776679/1‑100
                                                                                                      GCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATATCAAACAAGACTTA  >  2:1796364/1‑100
                                                                                                      GCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATATCAAACAAGACTTA  <  1:903451/100‑1
                                                                                                                                                                                                          
CTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/225653‑225755
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATATCAAACAAGACTTA  >  NC_000913/2729217‑2729315

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.