New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	349605 =	NA (NA)	12 (0.090)	6/164	NT	NA	noncoding (1/365 nt)	REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences	REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences
	?	NC_000913	349637 =	NA (NA)					noncoding (33/365 nt)	REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences	REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences

GGCGCATCAGGCATCGGTTGTCGGATGCGACGCCATCCGTCTTATCCGACCTACAGTTCAGTGCACCTCGTAGGCCTGATAAGTCGCGTCAGCGACGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/349709‑349605 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACG  >  NC_000913/349637‑349734                                                                                                                                                                                                             GGCGCATCAGGCATCGGTTGTCGGATGCGACGCCATCCGTCTTATCCGACCTACAGTTCAGTGCACCTCGTAGGCCTGATAAGTCGCGTCAGCGACGCAT                                                                                                         <  1:378950/100‑1    gaatttGGCATTGGTTGTCGGATGCGACGCTATACGTCTTATCCGACCTACAGTTCAGTGCACCTCGTAGGCCTGATAAGTCGCGTCAGCGACGCATCAG                                                                                                      <  1:3680403/94‑1    GCATCAGGCATCGGTTGTCGGATGCGACGCCATCCGTCTTATCCGACCTACAGTTCAGTGCACCTCGTAGGCCTGATAAGTCGCGTCAGCGACGCATCAG                                                                                                      <  1:1775641/100‑1    GCATCAGGCATCGGTTGTCGGATGCGACGCCATCCGTCTTATCCGACCTACAGTTCAGTACACCTCCCAGGACTGATAAGACGCATCAGCAACGCATCA                                                                                                       >  1:1227903/1‑99     CATCAGGCATCGGTTGTCGGATGCGACGCTATCCGTCTTATCCGACCTACAGTTCAGTGCACCTCGTTGGCCTGATAAGTCGCGTTAGCGACGCATCcg                                                                                                      <  1:2638709/99‑3     CATCAGGCATCGGTTGTCGGATGCGACGCCATCCGTGTTATCCGACCTACAGTTCAGTGCACCTCGTAGGCCTGATAAGTCGCGTCAGCGACGCATCAGG                                                                                                     >  1:2762462/1‑100     CATCAGGCATCGGTTGTCGGATGCGACGCCATCCGTCTTATCCGACCTACAGTTCAGTGCACCTCGTAGGCCTGATAAGTCGCGTCAGCGACGCATCAGG                                                                                                     >  2:2321048/1‑100     CATCAGGCATCGGTTGTCGGATGCGACGCCATCCGTCTTATCCGACCTACAGTTCAGTGCACCTCGTAGGCCTGATAAGTCGCGTCAGCGACGCATCAGG                                                                                                     >  1:2610635/1‑100       TCAGGAATCTGTTGTCGGATGCGACGCCATCCGTCTTATCCGACCTACAGTTCAGTGCACCTCGTAGGCCTGATAAGTCGCGTCAGCGACGCATCAGG                                                                                                     <  2:690824/98‑1           gcaatGGTTGTCGGATGCGACGCCATCCGTCTTATCCGACCTACAGTTCAGTGCACCTCGTAGGCCTGATAAGTCGCGTCAGCGACGCATCA                                                                                                       <  2:3871230/87‑1                 GTTGTCGTATTCTACGCTATCCGTCTTATCCGACCTACAGTTCAGTGCACCTCGTAGTCCTGATAAGTCGCGTCAGCGACGCA                                                                                                          <  2:3539632/83‑1                                                              TGCACCTCGTAGGCCTGATAAGTCGCGTCAGCGACGCATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAA                                            >  1:1571559/1‑100                                                                    cCGTAGGCCTGATAAGTCACGTCAGCGGCGCATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATG                                      >  1:3539318/2‑100                                                                      GTAGGCCTGATAAGTCGCGTCAGCGACGCATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCC                                    >  2:1014185/1‑100                                                                      GTAGGCCTGATAAGTCGCGTCAGCGACGCATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCC                                    >  1:1760652/1‑100                                                                        AGGCCTGATAAGTCGCGTCAGCGACGCATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTG                                  <  2:1571544/100‑1                                                                         GGCCTGATAAGTCGCGTCAGCGACGCATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGA                                 >  2:1102001/1‑100                                                                         GGCCTGATAAGTCGCGTCAGCGACGCATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCAGACAACCGATGCCTG                                  >  2:3643017/1‑99                                                                          GCCTGATAAGTCGCGTCAGCGACGCATCAGGCCTACGAGGTGCACTGAACTGTCAGTCGGATAAGACGGATGGCGACGCATCCGACAACCGAAGCCTG                                  >  2:1642498/1‑98                                                                          GCCTGATAAGTCGCGTCAGCGACGCATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGAT                                >  2:2742275/1‑100                                                                          GCCTGATAAGTCGCGTCAGCGACGCATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAAACGGATGGCGTCGCATCCGACAACaaattcga                                   >  1:1333371/1‑89                                                                           CCTGATAAGTCGCGTCAGCGACGCATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCAATGCCTGA                                 >  1:1581810/1‑98                                                                              GATAAGTCGCGTCAGCGGCGCATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCG                             >  1:555468/1‑99                                                                                                   ATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAag        >  1:2757495/1‑97                                                                                                   ATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGC       >  1:1869135/1‑100                                                                                                   ATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGC       >  1:496901/1‑100                                                                                                   ATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGAGCCGCTGACGTGACTTATCAGGC       >  2:3246496/1‑100                                                                                                    TCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGC       <  2:734549/99‑1                                                                                                      AGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTA    >  1:3659607/1‑100                                                                                                      AGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTA    >  2:1025998/1‑100                                                                                                      AGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCAGATACACCGCTGACGCGACTTATAAGG        >  2:1931262/1‑96                                                                                                       GGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTAC   >  1:507888/1‑100                                                                                                       GGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTAC   >  1:1815672/1‑100                                                                                                       GGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTA    >  1:683115/1‑99                                                                                                       GGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGAGGCGCCGCTGACGTGACTTATCAGGCCTAC   >  2:2434642/1‑100                                                                                                       GGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACCGATGGCGTCGCATCCGACAACAGATGCCTGATGCGTCTCTGACGCGACTTATGAGGCCT     >  2:868959/1‑98                                                                                                        GCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACG  <  1:3814657/100‑1                                                                                                                                                                                                             GGCGCATCAGGCATCGGTTGTCGGATGCGACGCCATCCGTCTTATCCGACCTACAGTTCAGTGCACCTCGTAGGCCTGATAAGTCGCGTCAGCGACGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/349709‑349605 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACG  >  NC_000913/349637‑349734

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.